Result of FASTA (omim) for
pFN21AE1551
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1551, 254 aa
1>>>pF1KE1551 254 - 254 aa - 254 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5783+/-0.000368; mu= 12.6350+/- 0.023
mean_var=68.2560+/-14.298, 0's: 0 Z-trim(113.1): 118 B-trim: 54 in 1/54
Lambda= 0.155240
statistics sampled from 22179 (22311) to 22179 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.262), width: 16
Scan time: 6.240
The best scores are: opt bits E(85289)
NP_002113 (OMIM: 146880,212750) HLA class II histo ( 255) 1489 342.5 4.4e-94
NP_064440 (OMIM: 613503) HLA class II histocompati ( 255) 1461 336.2 3.4e-92
XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA ( 206) 1173 271.7 7.4e-73
NP_001229453 (OMIM: 142880) HLA class II histocomp ( 260) 967 225.6 7e-59
NP_291032 (OMIM: 142880) HLA class II histocompati ( 260) 967 225.6 7e-59
NP_001229454 (OMIM: 142880) HLA class II histocomp ( 260) 967 225.6 7e-59
NP_002110 (OMIM: 142930) HLA class II histocompati ( 250) 942 220.0 3.3e-57
NP_061984 (OMIM: 142860) HLA class II histocompati ( 254) 886 207.4 2e-53
NP_006111 (OMIM: 142855) HLA class II histocompati ( 261) 324 81.6 1.6e-15
NP_001185787 (OMIM: 615161) HLA class II histocomp ( 227) 240 62.7 6.4e-10
XP_011512862 (OMIM: 615161) PREDICTED: HLA class I ( 256) 240 62.7 7.2e-10
NP_002109 (OMIM: 142856) HLA class II histocompati ( 263) 240 62.8 7.3e-10
NP_001287719 (OMIM: 615161) HLA class II histocomp ( 264) 239 62.5 8.6e-10
XP_005249108 (OMIM: 615161) PREDICTED: HLA class I ( 275) 239 62.5 8.9e-10
NP_002112 (OMIM: 142858) HLA class II histocompati ( 258) 230 60.5 3.4e-09
NP_002116 (OMIM: 604776) major histocompatibility ( 266) 227 59.8 5.6e-09
XP_011512864 (OMIM: 604776) PREDICTED: major histo ( 276) 227 59.9 5.7e-09
XP_011546040 (OMIM: 126200,142857,180300,181000) P ( 266) 224 59.2 8.9e-09
NP_001230894 (OMIM: 126200,142857,180300,181000) m ( 266) 224 59.2 8.9e-09
NP_002115 (OMIM: 126200,142857,180300,181000) majo ( 266) 217 57.6 2.6e-08
XP_011512863 (OMIM: 615161) PREDICTED: HLA class I ( 219) 214 56.9 3.5e-08
NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 212 56.5 5.6e-08
NP_072049 (OMIM: 612735) major histocompatibility ( 266) 212 56.5 5.7e-08
NP_002114 (OMIM: 123400,126200,212750,604305) HLA ( 261) 210 56.0 7.7e-08
NP_002111 (OMIM: 600629) HLA class II histocompati ( 273) 208 55.6 1.1e-07
XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 204 54.7 1.7e-07
XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 206 55.2 1.8e-07
XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 204 54.7 2.3e-07
NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 204 54.7 2.5e-07
XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 204 54.8 2.7e-07
XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 204 54.8 2.9e-07
XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435) 204 54.8 3e-07
NP_001091949 (OMIM: 143110) HLA class I histocompa ( 442) 204 54.8 3.1e-07
XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 198 53.4 7.6e-07
NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 196 52.9 8.1e-07
XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 196 53.0 8.6e-07
NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 196 53.0 8.6e-07
NP_620577 (OMIM: 104300,176100,176200,235200,61263 ( 246) 194 52.4 8.7e-07
NP_620575 (OMIM: 104300,176100,176200,235200,61263 ( 334) 195 52.7 9.7e-07
NP_620579 (OMIM: 104300,176100,176200,235200,61263 ( 168) 189 51.2 1.4e-06
NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 191 51.8 1.8e-06
NP_620572 (OMIM: 104300,176100,176200,235200,61263 ( 242) 189 51.3 1.9e-06
NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256) 189 51.3 2e-06
NP_064455 (OMIM: 146770,613500) immunoglobulin lam ( 213) 187 50.8 2.3e-06
XP_011528471 (OMIM: 146770,613500) PREDICTED: immu ( 214) 187 50.8 2.3e-06
NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365) 186 50.7 4.3e-06
NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365) 186 50.7 4.3e-06
XP_005258714 (OMIM: 601437) PREDICTED: IgG recepto ( 225) 183 50.0 4.5e-06
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 178 48.9 1.1e-05
NP_001181928 (OMIM: 600764) major histocompatibili ( 296) 178 48.9 1.2e-05
>>NP_002113 (OMIM: 146880,212750) HLA class II histocomp (255 aa)
initn: 1479 init1: 1065 opt: 1489 Z-score: 1810.0 bits: 342.5 E(85289): 4.4e-94
Smith-Waterman score: 1489; 89.0% identity (93.7% similar) in 255 aa overlap (1-254:1-255)
10 20 30 40 50 60
pF1KE1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV
:::::::.::::::::::::::::::::::::: :::::: :::::::::::::::::::
NP_002 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 DLGRKETVWCLPVLRQFR-FDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK
:: ::::.: : . .: :::: :: :.:: ::::: .::: :::::::::::::::::
NP_002 DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL
::::::::: :::::::::::::::::::::.::::::::::::::::::::::::::.:
NP_002 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII
:::.: :::::::::::.:::::::::::::::::::::::::::::::.::::::::::
NP_002 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII
190 200 210 220 230 240
240 250
pF1KE1 RGLRSVGASRHQGPL
.::::::::::::::
NP_002 QGLRSVGASRHQGPL
250
>>NP_064440 (OMIM: 613503) HLA class II histocompatibili (255 aa)
initn: 1460 init1: 1027 opt: 1461 Z-score: 1776.1 bits: 336.2 E(85289): 3.4e-92
Smith-Waterman score: 1461; 86.3% identity (94.5% similar) in 255 aa overlap (1-254:1-255)
10 20 30 40 50 60
pF1KE1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV
:::::::.:::::::.:::::::::::::::::::::.:::.::::::::::::::.:::
NP_064 MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK
:: ::::: ::.. .: :::: :: :.:: ::.:. ....::::::::::::::::::
NP_064 DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL
:::::::: ::::::::::::::::::::::::::::::::::::::::::::::::.:
NP_064 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII
:::.: :::::::::::.::::::::::::::::::::.::::::::::.::::::::::
NP_064 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII
190 200 210 220 230 240
240 250
pF1KE1 RGLRSVGASRHQGPL
.:::::::::::: :
NP_064 QGLRSVGASRHQGLL
250
>>XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA clas (206 aa)
initn: 1163 init1: 749 opt: 1173 Z-score: 1429.0 bits: 271.7 E(85289): 7.4e-73
Smith-Waterman score: 1173; 87.3% identity (92.2% similar) in 204 aa overlap (1-203:1-204)
10 20 30 40 50 60
pF1KE1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV
:::::::.::::::::::::::::::::::::: :::::: :::::::::::::::::::
XP_006 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 DLGRKETVWCLPVLRQFR-FDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK
:: ::::.: : . .: :::: :: :.:: ::::: .::: :::::::::::::::::
XP_006 DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL
::::::::: :::::::::::::::::::::.::::::::::::::::::::::::::.:
XP_006 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII
:::.: :::::::::::.::::::
XP_006 PSADEIYDCKVEHWGLDQPLLKHWVE
190 200
>>NP_001229453 (OMIM: 142880) HLA class II histocompatib (260 aa)
initn: 896 init1: 781 opt: 967 Z-score: 1178.1 bits: 225.6 E(85289): 7e-59
Smith-Waterman score: 967; 58.0% identity (79.6% similar) in 255 aa overlap (1-254:7-260)
10 20 30 40 50
pF1KE1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDG
:. .:..: ::.:. ..: :. : ::::..:.. . :.. :.:.. :::
NP_001 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAA-FVQTHRPTGEFMFEFDE
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 DEQFYVDLGRKETVWCLPVLRQ-FRFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPE
::.::::: .::::: : . : : :. : .:.:::.:..:::.::.::: : :::. ::
NP_001 DEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 VTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKI
:::: : :: ::::: ::: .:..::::.:.::: ::. :::::.:. :: ..:.:: :.
NP_001 VTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 SYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVV
:::..::::. :::.:::::::.::::::: . : : : ::::.::::: .:::::.:
NP_001 HYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIV
180 190 200 210 220 230
240 250
pF1KE1 GTVFIIRGLRSVGASRHQGPL
:::.::..::: : :: :
NP_001 GTVLIIKSLRSGHDPRAQGTL
240 250 260
>>NP_291032 (OMIM: 142880) HLA class II histocompatibili (260 aa)
initn: 896 init1: 781 opt: 967 Z-score: 1178.1 bits: 225.6 E(85289): 7e-59
Smith-Waterman score: 967; 58.0% identity (79.6% similar) in 255 aa overlap (1-254:7-260)
10 20 30 40 50
pF1KE1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDG
:. .:..: ::.:. ..: :. : ::::..:.. . :.. :.:.. :::
NP_291 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAA-FVQTHRPTGEFMFEFDE
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 DEQFYVDLGRKETVWCLPVLRQ-FRFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPE
::.::::: .::::: : . : : :. : .:.:::.:..:::.::.::: : :::. ::
NP_291 DEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 VTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKI
:::: : :: ::::: ::: .:..::::.:.::: ::. :::::.:. :: ..:.:: :.
NP_291 VTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 SYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVV
:::..::::. :::.:::::::.::::::: . : : : ::::.::::: .:::::.:
NP_291 HYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIV
180 190 200 210 220 230
240 250
pF1KE1 GTVFIIRGLRSVGASRHQGPL
:::.::..::: : :: :
NP_291 GTVLIIKSLRSGHDPRAQGTL
240 250 260
>>NP_001229454 (OMIM: 142880) HLA class II histocompatib (260 aa)
initn: 896 init1: 781 opt: 967 Z-score: 1178.1 bits: 225.6 E(85289): 7e-59
Smith-Waterman score: 967; 58.0% identity (79.6% similar) in 255 aa overlap (1-254:7-260)
10 20 30 40 50
pF1KE1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDG
:. .:..: ::.:. ..: :. : ::::..:.. . :.. :.:.. :::
NP_001 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAA-FVQTHRPTGEFMFEFDE
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 DEQFYVDLGRKETVWCLPVLRQ-FRFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPE
::.::::: .::::: : . : : :. : .:.:::.:..:::.::.::: : :::. ::
NP_001 DEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 VTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKI
:::: : :: ::::: ::: .:..::::.:.::: ::. :::::.:. :: ..:.:: :.
NP_001 VTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 SYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVV
:::..::::. :::.:::::::.::::::: . : : : ::::.::::: .:::::.:
NP_001 HYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIV
180 190 200 210 220 230
240 250
pF1KE1 GTVFIIRGLRSVGASRHQGPL
:::.::..::: : :: :
NP_001 GTVLIIKSLRSGHDPRAQGTL
240 250 260
>>NP_002110 (OMIM: 142930) HLA class II histocompatibili (250 aa)
initn: 962 init1: 717 opt: 942 Z-score: 1148.1 bits: 220.0 E(85289): 3.3e-57
Smith-Waterman score: 942; 58.3% identity (79.3% similar) in 242 aa overlap (1-241:1-242)
10 20 30 40 50 60
pF1KE1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV
: : .:.:: .: :..:: . :::..::: .::::: :::.::::: .. : :
NP_002 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK
:: ..:.:: :: . .: ::::: .:..::..: .:. :..::: . : : :.:::. :
NP_002 DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL
: : :::::::::.::::::::.::::: ::..:::::..::: :. :: : :. :: ..
NP_002 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII
::::. :::.::::::: :::.::: ..: : . ::.::::::..::::..::::.::
NP_002 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII
190 200 210 220 230 240
240 250
pF1KE1 RGLRSVGASRHQGPL
:
NP_002 MGTYVSSVPR
250
>>NP_061984 (OMIM: 142860) HLA class II histocompatibili (254 aa)
initn: 863 init1: 753 opt: 886 Z-score: 1080.2 bits: 207.4 E(85289): 2e-53
Smith-Waterman score: 886; 52.9% identity (76.9% similar) in 255 aa overlap (1-254:1-254)
10 20 30 40 50 60
pF1KE1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV
: .. . .:: . ....:: . : .:: ...: . ::.. .::::: :.:
NP_061 MAISGVPVLGFFIIAVLMSAQESWAIKEEHVI-IQAEFYLNPDQSGEFMFDFDGDEIFHV
10 20 30 40 50
70 80 90 100 110
pF1KE1 DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK
:...::::: : . .: :. : ::.:::: : ::. . :::: : :: :::::...
NP_061 DMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTN
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL
::: : .::.:::..:.. :::::.::: ::. :: ::::: :: . :: : :. :: .:
NP_061 SPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII
::.:. :::.:::::::.::::::: . :.:. : ::.:::::::.::::::..::.:::
NP_061 PSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFII
180 190 200 210 220 230
240 250
pF1KE1 RGLRSVGASRHQGPL
.:::. .:....:::
NP_061 KGLRKSNAAERRGPL
240 250
>>NP_006111 (OMIM: 142855) HLA class II histocompatibili (261 aa)
initn: 276 init1: 135 opt: 324 Z-score: 399.8 bits: 81.6 E(85289): 1.6e-15
Smith-Waterman score: 324; 29.7% identity (59.3% similar) in 246 aa overlap (7-239:20-252)
10 20 30 40
pF1KE1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQ
:. . :. . .: .:. .:. . : :. .::
NP_006 MGHEQNQGAALLQMLPLLWLLPHSWAVPEAPTPMWPDDL-QNHTFLHTVYC-QDGSPSVG
10 20 30 40 50
50 60 70 80 90
pF1KE1 YTHEFDGDEQFYVDLGRKETVWCLPVLRQFR----------FDPQFALTNIAVLKHNLNS
.. .: :. :. :.... : :: . .. :: .: : . .:..
NP_006 LSEAYDEDQLFFFDFSQNTRVPRLPEFADWAQEQGDAPAILFDKEFCEWMIQQIGPKLDG
60 70 80 90 100 110
100 110 120 130 140 150
pF1KE1 LIKRSNSTAATNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSV-TEG
: : . : . ::. .:. .:.:: :.:.:.:.:::.....: . ::: .::
NP_006 KIPVSRG------FPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNW--QHHSVPVEG
120 130 140 150 160 170
160 170 180 190 200 210
pF1KE1 VSETSFLSKSDH-SFFKISYLTLLPSAEESYDCKVEHWGLDK-PLLKHWEPEIPAPMSEL
. : :.: : :: .:::.. : . ..: : : .:. . .: :. : :.:
NP_006 FGPT-FVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHE-IDRYTAIAYWVPRNALP-SDL
180 190 200 210 220
220 230 240 250
pF1KE1 TETVVCALGLSVGLVGIVVGTVFIIRGLRSVGASRHQGPL
:.:.:......:..::.:: :.::
NP_006 LENVLCGVAFGLGVLGIIVGIVLIIYFRKPCSGD
230 240 250 260
>>NP_001185787 (OMIM: 615161) HLA class II histocompatib (227 aa)
initn: 150 init1: 132 opt: 240 Z-score: 299.0 bits: 62.7 E(85289): 6.4e-10
Smith-Waterman score: 240; 26.7% identity (59.0% similar) in 161 aa overlap (54-214:73-226)
30 40 50 60 70 80
pF1KE1 EDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYVDLGRKETVWCLPVLRQFRFDPQF
:. : ..:::. : ..: . .
NP_001 CYFTNGTERVRGVARYIYNREEYGRFDSDVGEFQAVTELGRSIEDWN--NYKDFLEQERA
50 60 70 80 90 100
90 100 110 120 130 140
pF1KE1 ALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVN
:. .. .:: .. .. .: . : ::. . .:.. :.:.: : ...: ..
NP_001 AVDKVC--RHNYEAELR---TTLQRQVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIK
110 120 130 140 150
150 160 170 180 190 200
pF1KE1 ITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHW
. :. : . : :: ::.. ..: .: . .: . :. . : :.::: .:..:. .:
NP_001 VRWFRNDQEETAGVVSTSLIRNGDWTFQILVMLEITPQRGDIYTCQVEHPSLQSPITVEW
160 170 180 190 200 210
210 220 230 240 250
pF1KE1 EPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFIIRGLRSVGASRHQGPL
.:. : : . :
NP_001 RPRGPPPAGLLH
220
254 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:08:46 2016 done: Mon Nov 7 02:08:47 2016
Total Scan time: 6.240 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]