Result of FASTA (omim) for
pFN21AE1548
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1548, 261 aa
1>>>pF1KE1548 261 - 261 aa - 261 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1518+/-0.000355; mu= 15.2286+/- 0.022
mean_var=64.8884+/-12.934, 0's: 0 Z-trim(113.5): 136 B-trim: 0 in 0/58
Lambda= 0.159217
statistics sampled from 22729 (22878) to 22729 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.268), width: 16
Scan time: 6.320
The best scores are: opt bits E(85289)
NP_001230891 (OMIM: 123400,126200,212750,604305) H ( 261) 1631 383.3 2.3e-106
NP_002114 (OMIM: 123400,126200,212750,604305) HLA ( 261) 1606 377.6 1.2e-104
NP_001230890 (OMIM: 123400,126200,212750,604305) H ( 269) 1586 373.0 3.1e-103
XP_011512862 (OMIM: 615161) PREDICTED: HLA class I ( 256) 1409 332.3 5.1e-91
NP_001287719 (OMIM: 615161) HLA class II histocomp ( 264) 1389 327.8 1.3e-89
XP_005249108 (OMIM: 615161) PREDICTED: HLA class I ( 275) 1389 327.8 1.3e-89
XP_011512863 (OMIM: 615161) PREDICTED: HLA class I ( 219) 1169 277.2 1.8e-74
NP_001185787 (OMIM: 615161) HLA class II histocomp ( 227) 1169 277.2 1.8e-74
NP_002116 (OMIM: 604776) major histocompatibility ( 266) 1101 261.6 1e-69
XP_011512864 (OMIM: 604776) PREDICTED: major histo ( 276) 1101 261.6 1.1e-69
XP_011546040 (OMIM: 126200,142857,180300,181000) P ( 266) 1096 260.5 2.3e-69
NP_002115 (OMIM: 126200,142857,180300,181000) majo ( 266) 1093 259.8 3.7e-69
NP_002112 (OMIM: 142858) HLA class II histocompati ( 258) 1087 258.4 9.5e-69
NP_001230894 (OMIM: 126200,142857,180300,181000) m ( 266) 1082 257.2 2.2e-68
NP_072049 (OMIM: 612735) major histocompatibility ( 266) 1055 251.0 1.6e-66
NP_002111 (OMIM: 600629) HLA class II histocompati ( 273) 979 233.6 2.9e-61
NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 330 84.5 2.1e-16
NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 310 80.0 6.1e-15
NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 310 80.0 6.3e-15
NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 310 80.0 6.5e-15
XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 310 80.0 6.5e-15
NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298) 288 74.9 1.9e-13
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 279 72.8 7e-13
NP_001522 (OMIM: 600764) major histocompatibility ( 341) 275 71.9 1.7e-12
NP_002109 (OMIM: 142856) HLA class II histocompati ( 263) 272 71.2 2.2e-12
NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256) 258 68.0 2e-11
XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 253 66.9 5.6e-11
NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 253 66.9 5.6e-11
XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 253 66.9 6.2e-11
XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 253 66.9 6.6e-11
XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 253 66.9 6.7e-11
XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435) 253 67.0 6.8e-11
NP_001091949 (OMIM: 143110) HLA class I histocompa ( 442) 253 67.0 6.9e-11
XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 248 65.6 8.9e-11
NP_002110 (OMIM: 142930) HLA class II histocompati ( 250) 247 65.4 1.1e-10
XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 248 65.7 1.2e-10
NP_001181928 (OMIM: 600764) major histocompatibili ( 296) 244 64.8 2.1e-10
NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 244 64.8 2.5e-10
XP_016885777 (OMIM: 142800,608579) PREDICTED: HLA ( 362) 243 64.6 2.9e-10
XP_005275388 (OMIM: 142800,608579) PREDICTED: HLA ( 391) 243 64.6 3.1e-10
NP_291032 (OMIM: 142880) HLA class II histocompati ( 260) 237 63.1 5.7e-10
NP_001229454 (OMIM: 142880) HLA class II histocomp ( 260) 237 63.1 5.7e-10
NP_001229453 (OMIM: 142880) HLA class II histocomp ( 260) 237 63.1 5.7e-10
NP_005505 (OMIM: 106300,142830,608579) major histo ( 362) 238 63.5 6.4e-10
XP_016866307 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 232 62.0 1.2e-09
XP_016866306 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 232 62.0 1.2e-09
NP_002118 (OMIM: 142871,600807) HLA class I histoc ( 338) 232 62.1 1.6e-09
XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA ( 343) 232 62.1 1.6e-09
NP_005507 (OMIM: 143010) HLA class I histocompatib ( 358) 230 61.6 2.3e-09
XP_016866298 (OMIM: 143010) PREDICTED: HLA class I ( 359) 230 61.6 2.3e-09
>>NP_001230891 (OMIM: 123400,126200,212750,604305) HLA c (261 aa)
initn: 1631 init1: 1631 opt: 1631 Z-score: 2030.5 bits: 383.3 E(85289): 2.3e-106
Smith-Waterman score: 1631; 92.7% identity (96.6% similar) in 261 aa overlap (1-261:1-261)
10 20 30 40 50 60
pF1KE1 MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVT
::::::::::::::.:::::::.::::::::::::::::::::::::::::::::::::.
NP_001 MSWKKALRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR
: :::::: .::::::: .:::: :: ::::::::::..::: :: .: :::::::::::
NP_001 RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_001 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL
:::::::::::::::::::::::::::::::::.:: :::::::::::::::::::::::
NP_001 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL
190 200 210 220 230 240
250 260
pF1KE1 GLIFLGLGLIIHHRSQKGLLH
:::::::::::::::::::::
NP_001 GLIFLGLGLIIHHRSQKGLLH
250 260
>>NP_002114 (OMIM: 123400,126200,212750,604305) HLA clas (261 aa)
initn: 1606 init1: 1606 opt: 1606 Z-score: 1999.5 bits: 377.6 E(85289): 1.2e-104
Smith-Waterman score: 1606; 91.6% identity (96.2% similar) in 261 aa overlap (1-261:1-261)
10 20 30 40 50 60
pF1KE1 MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVT
::::::::::: ::::::::::::::. .:::::::::::.:::::::::::::::::::
NP_002 MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR
:::::::::::::::::::::::: : : :::::::::::: :::::::::::::.. .:
NP_002 RYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI
::::::::::::::::::::::::::::::::::.::::::::::::::.::::::::
NP_002 GILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL
:::::::::::::::::::::::::::::::::.:: :::::::::::::::::.:::::
NP_002 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVL
190 200 210 220 230 240
250 260
pF1KE1 GLIFLGLGLIIHHRSQKGLLH
:::::::::::..::::::::
NP_002 GLIFLGLGLIIRQRSQKGLLH
250 260
>>NP_001230890 (OMIM: 123400,126200,212750,604305) HLA c (269 aa)
initn: 1586 init1: 1586 opt: 1586 Z-score: 1974.5 bits: 373.0 E(85289): 3.1e-103
Smith-Waterman score: 1586; 91.5% identity (96.1% similar) in 258 aa overlap (1-258:1-258)
10 20 30 40 50 60
pF1KE1 MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVT
::::::::::: ::::::::::::::. .:::::::::::.:::::::::::::::::::
NP_001 MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR
:::::::::::::::::::::::: : : :::::::::::: :::::::::::::.. .:
NP_001 RYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI
::::::::::::::::::::::::::::::::::.::::::::::::::.::::::::
NP_001 GILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL
:::::::::::::::::::::::::::::::::.:: :::::::::::::::::.:::::
NP_001 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVL
190 200 210 220 230 240
250 260
pF1KE1 GLIFLGLGLIIHHRSQKGLLH
:::::::::::..:::::
NP_001 GLIFLGLGLIIRQRSQKGPQGPPPAGLLH
250 260
>>XP_011512862 (OMIM: 615161) PREDICTED: HLA class II hi (256 aa)
initn: 1410 init1: 1013 opt: 1409 Z-score: 1755.0 bits: 332.3 E(85289): 5.1e-91
Smith-Waterman score: 1409; 82.4% identity (93.0% similar) in 256 aa overlap (6-261:2-256)
10 20 30 40 50 60
pF1KE1 MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVT
::.::::. .:.::.::.::::::::.:: :.::. :::::::::::::::: :.
XP_011 MALQIPGGFWAAAVTVMLVMLSTPVAEARDFPKDFLVQFKGMCYFTNGTERVRGVA
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR
:::::::::.::::::: ..::: :: . : ::. :. ::. :: .: ::::::. :::
XP_011 RYIYNREEYGRFDSDVGEFQAVTELGR-SIEDWNNYKDFLEQERAAVDKVCRHNYEAELR
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI
:::::.:::::::::::::::::::::::::::::::::::::::::::::.::::: ::
XP_011 TTLQRQVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTSLI
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL
::::::::::::::.::::::.:::.:::::::.:: :::::::::::::::::::::::
XP_011 RNGDWTFQILVMLEITPQRGDIYTCQVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL
180 190 200 210 220 230
250 260
pF1KE1 GLIFLGLGLIIHHRSQKGLLH
:::::::::::.::.::::::
XP_011 GLIFLGLGLIIRHRGQKGLLH
240 250
>>NP_001287719 (OMIM: 615161) HLA class II histocompatib (264 aa)
initn: 1390 init1: 993 opt: 1389 Z-score: 1730.0 bits: 327.8 E(85289): 1.3e-89
Smith-Waterman score: 1389; 82.2% identity (92.9% similar) in 253 aa overlap (6-258:2-253)
10 20 30 40 50 60
pF1KE1 MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVT
::.::::. .:.::.::.::::::::.:: :.::. :::::::::::::::: :.
NP_001 MALQIPGGFWAAAVTVMLVMLSTPVAEARDFPKDFLVQFKGMCYFTNGTERVRGVA
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR
:::::::::.::::::: ..::: :: . : ::. :. ::. :: .: ::::::. :::
NP_001 RYIYNREEYGRFDSDVGEFQAVTELGR-SIEDWNNYKDFLEQERAAVDKVCRHNYEAELR
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI
:::::.:::::::::::::::::::::::::::::::::::::::::::::.::::: ::
NP_001 TTLQRQVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTSLI
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL
::::::::::::::.::::::.:::.:::::::.:: :::::::::::::::::::::::
NP_001 RNGDWTFQILVMLEITPQRGDIYTCQVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL
180 190 200 210 220 230
250 260
pF1KE1 GLIFLGLGLIIHHRSQKGLLH
:::::::::::.::.:::
NP_001 GLIFLGLGLIIRHRGQKGPRGPPPAGLLH
240 250 260
>>XP_005249108 (OMIM: 615161) PREDICTED: HLA class II hi (275 aa)
initn: 1390 init1: 993 opt: 1389 Z-score: 1729.8 bits: 327.8 E(85289): 1.3e-89
Smith-Waterman score: 1389; 82.2% identity (92.9% similar) in 253 aa overlap (6-258:2-253)
10 20 30 40 50 60
pF1KE1 MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVT
::.::::. .:.::.::.::::::::.:: :.::. :::::::::::::::: :.
XP_005 MALQIPGGFWAAAVTVMLVMLSTPVAEARDFPKDFLVQFKGMCYFTNGTERVRGVA
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR
:::::::::.::::::: ..::: :: . : ::. :. ::. :: .: ::::::. :::
XP_005 RYIYNREEYGRFDSDVGEFQAVTELGR-SIEDWNNYKDFLEQERAAVDKVCRHNYEAELR
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI
:::::.:::::::::::::::::::::::::::::::::::::::::::::.::::: ::
XP_005 TTLQRQVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTSLI
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL
::::::::::::::.::::::.:::.:::::::.:: :::::::::::::::::::::::
XP_005 RNGDWTFQILVMLEITPQRGDIYTCQVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL
180 190 200 210 220 230
250 260
pF1KE1 GLIFLGLGLIIHHRSQKGLLH
:::::::::::.::.:::
XP_005 GLIFLGLGLIIRHRGQKGPRGPPPAGNISAMIQSGERAQA
240 250 260 270
>>XP_011512863 (OMIM: 615161) PREDICTED: HLA class II hi (219 aa)
initn: 1170 init1: 773 opt: 1169 Z-score: 1458.1 bits: 277.2 E(85289): 1.8e-74
Smith-Waterman score: 1169; 80.1% identity (91.7% similar) in 216 aa overlap (6-221:2-216)
10 20 30 40 50 60
pF1KE1 MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVT
::.::::. .:.::.::.::::::::.:: :.::. :::::::::::::::: :.
XP_011 MALQIPGGFWAAAVTVMLVMLSTPVAEARDFPKDFLVQFKGMCYFTNGTERVRGVA
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR
:::::::::.::::::: ..::: :: . : ::. :. ::. :: .: ::::::. :::
XP_011 RYIYNREEYGRFDSDVGEFQAVTELGR-SIEDWNNYKDFLEQERAAVDKVCRHNYEAELR
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI
:::::.:::::::::::::::::::::::::::::::::::::::::::::.::::: ::
XP_011 TTLQRQVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTSLI
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL
::::::::::::::.::::::.:::.:::::::.:: ::::
XP_011 RNGDWTFQILVMLEITPQRGDIYTCQVEHPSLQSPITVEWRLLH
180 190 200 210
250 260
pF1KE1 GLIFLGLGLIIHHRSQKGLLH
>>NP_001185787 (OMIM: 615161) HLA class II histocompatib (227 aa)
initn: 1170 init1: 773 opt: 1169 Z-score: 1457.9 bits: 277.2 E(85289): 1.8e-74
Smith-Waterman score: 1169; 80.1% identity (91.7% similar) in 216 aa overlap (6-221:2-216)
10 20 30 40 50 60
pF1KE1 MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVT
::.::::. .:.::.::.::::::::.:: :.::. :::::::::::::::: :.
NP_001 MALQIPGGFWAAAVTVMLVMLSTPVAEARDFPKDFLVQFKGMCYFTNGTERVRGVA
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR
:::::::::.::::::: ..::: :: . : ::. :. ::. :: .: ::::::. :::
NP_001 RYIYNREEYGRFDSDVGEFQAVTELGR-SIEDWNNYKDFLEQERAAVDKVCRHNYEAELR
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI
:::::.:::::::::::::::::::::::::::::::::::::::::::::.::::: ::
NP_001 TTLQRQVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTSLI
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL
::::::::::::::.::::::.:::.:::::::.:: ::::
NP_001 RNGDWTFQILVMLEITPQRGDIYTCQVEHPSLQSPITVEWRPRGPPPAGLLH
180 190 200 210 220
250 260
pF1KE1 GLIFLGLGLIIHHRSQKGLLH
>>NP_002116 (OMIM: 604776) major histocompatibility comp (266 aa)
initn: 1101 init1: 1101 opt: 1101 Z-score: 1372.4 bits: 261.6 E(85289): 1e-69
Smith-Waterman score: 1101; 64.7% identity (82.1% similar) in 252 aa overlap (7-258:4-255)
10 20 30 40 50 60
pF1KE1 MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVT
:..::: .: .:. : .::.:.: . :. :. : : :.: :::::::..
NP_002 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLH
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR
: :::.:: ::::::: ::::: :: : ::::::::. :: :: .:: ::::: .
NP_002 RDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGES
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI
:.:::::: ::. :.::..:.:::::::::. :::..:.::::::.::: .::::: ::
NP_002 FTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLI
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL
.::::::: ::::: .:. :.::::.:::::. .:. :::::::::::::::::.:::::
NP_002 QNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVL
180 190 200 210 220 230
250 260
pF1KE1 GLIFLGLGLIIHHRSQKGLLH
::.::: ::.:. ..:::
NP_002 GLLFLGAGLFIYFKNQKGHSGLHPTGLVS
240 250 260
>>XP_011512864 (OMIM: 604776) PREDICTED: major histocomp (276 aa)
initn: 1101 init1: 1101 opt: 1101 Z-score: 1372.2 bits: 261.6 E(85289): 1.1e-69
Smith-Waterman score: 1101; 64.7% identity (82.1% similar) in 252 aa overlap (7-258:4-255)
10 20 30 40 50 60
pF1KE1 MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVT
:..::: .: .:. : .::.:.: . :. :. : : :.: :::::::..
XP_011 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLH
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR
: :::.:: ::::::: ::::: :: : ::::::::. :: :: .:: ::::: .
XP_011 RDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGES
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI
:.:::::: ::. :.::..:.:::::::::. :::..:.::::::.::: .::::: ::
XP_011 FTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLI
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL
.::::::: ::::: .:. :.::::.:::::. .:. :::::::::::::::::.:::::
XP_011 QNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVL
180 190 200 210 220 230
250 260
pF1KE1 GLIFLGLGLIIHHRSQKGLLH
::.::: ::.:. ..:::
XP_011 GLLFLGAGLFIYFKNQKGHSGLHPTVLSSESLKERKRSC
240 250 260 270
261 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:03:04 2016 done: Sun Nov 6 23:03:05 2016
Total Scan time: 6.320 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]