Result of FASTA (ccds) for
pFN21AE1547
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1547, 591 aa
1>>>pF1KE1547 591 - 591 aa - 591 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7062+/-0.000833; mu= 16.7889+/- 0.050
mean_var=69.5707+/-13.890, 0's: 0 Z-trim(107.1): 67 B-trim: 0 in 0/49
Lambda= 0.153766
statistics sampled from 9305 (9372) to 9305 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.288), width: 16
Scan time: 2.680
The best scores are: opt bits E(32554)
CCDS4200.2 CDC23 gene_id:8697|Hs108|chr5 ( 597) 3922 879.3 0
CCDS74090.1 CDC27 gene_id:996|Hs108|chr17 ( 823) 401 98.3 4.2e-20
CCDS11509.1 CDC27 gene_id:996|Hs108|chr17 ( 824) 401 98.3 4.2e-20
CCDS45720.1 CDC27 gene_id:996|Hs108|chr17 ( 830) 401 98.3 4.2e-20
>>CCDS4200.2 CDC23 gene_id:8697|Hs108|chr5 (597 aa)
initn: 3922 init1: 3922 opt: 3922 Z-score: 4698.0 bits: 879.3 E(32554): 0
Smith-Waterman score: 3922; 100.0% identity (100.0% similar) in 591 aa overlap (1-591:7-597)
10 20 30 40 50
pF1KE1 MVPVAVTAAVAPVLSINSDFSDLREIKKQLLLIAGLTRERGLLHSSKWSAELAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAASTSMVPVAVTAAVAPVLSINSDFSDLREIKKQLLLIAGLTRERGLLHSSKWSAELAF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 SLPALPLAELQPPPPITEEDAQDMDAYTLAKAYFDVKEYDRAAHFLHGCNSKKAYFLYMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SLPALPLAELQPPPPITEEDAQDMDAYTLAKAYFDVKEYDRAAHFLHGCNSKKAYFLYMY
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 SRYLSGEKKKDDETVDSLGPLEKGQVKNEALRELRVELSKKHQARELDGFGLYLYGVVLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SRYLSGEKKKDDETVDSLGPLEKGQVKNEALRELRVELSKKHQARELDGFGLYLYGVVLR
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 KLDLVKEAIDVFVEATHVLPLHWGAWLELCNLITDKEMLKFLSLPDTWMKEFFLAHIYTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KLDLVKEAIDVFVEATHVLPLHWGAWLELCNLITDKEMLKFLSLPDTWMKEFFLAHIYTE
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 LQLIEEALQKYQNLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LQLIEEALQKYQNLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENM
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE1 DTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALKL
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE1 NPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 NPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLY
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE1 YYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKMALVKLAKLHEQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKMALVKLAKLHEQL
430 440 450 460 470 480
480 490 500 510 520 530
pF1KE1 TESEQAAQCYIKYIQDIYSCGEIVEHLEESTAFRYLAQYYFKCKLWDEASTCAQKCCAFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TESEQAAQCYIKYIQDIYSCGEIVEHLEESTAFRYLAQYYFKCKLWDEASTCAQKCCAFN
490 500 510 520 530 540
540 550 560 570 580 590
pF1KE1 DTREEGKALLRQILQLRNQGETPTTEVPAPFFLPASLSANNTPTRRVSPLNLSSVTP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DTREEGKALLRQILQLRNQGETPTTEVPAPFFLPASLSANNTPTRRVSPLNLSSVTP
550 560 570 580 590
>>CCDS74090.1 CDC27 gene_id:996|Hs108|chr17 (823 aa)
initn: 496 init1: 370 opt: 401 Z-score: 474.4 bits: 98.3 E(32554): 4.2e-20
Smith-Waterman score: 405; 30.0% identity (62.7% similar) in 263 aa overlap (256-516:497-748)
230 240 250 260 270 280
pF1KE1 FFLAHIYTELQLIEEALQKYQNLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRK
..... ::. :: .. . .: ::.:.:.
CCDS74 EMGKGYLALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRR
470 480 490 500 510 520
290 300 310 320 330 340
pF1KE1 QDPYRIENMDTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAA
. ::.:.:. .:. :. . :: :...: ..:: :. :. :: .::. .:. :
CCDS74 IENYRVEGMEIYSTTLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAI
530 540 550 560 570 580
350 360 370 380 390 400
pF1KE1 LYFQRALKLNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEI
.::::....: : :.::.:::.. .. . :. .:.::.:: : : ::::::. :
CCDS74 KFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIY--
590 600 610 620 630 640
410 420 430 440 450 460
pF1KE1 LKMPFYCL--YYYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKMA
:. . : .....: .. :..: .: .: . :.. .: .: .. : ..
CCDS74 YKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVI-DPKN--
650 660 670 680 690 700
470 480 490 500 510 520
pF1KE1 LVKLAKLHEQLTESEQAAQCYIKYIQDIYSCGEIVEHLEESTAFRYLAQYYFKCKLWDEA
: :.:. . : . : . .:.. .:: .:: .. ... : :
CCDS74 --PLCKFHR--ASVLFANEKYKSALQELEELKQIVP--KESLVYFLIGKVYKKLGQTHLA
710 720 730 740 750
530 540 550 560 570 580
pF1KE1 STCAQKCCAFNDTREEGKALLRQILQLRNQGETPTTEVPAPFFLPASLSANNTPTRRVSP
CCDS74 LMNFSWAMDLDPKGANNQIKEAIDKRYLPDDEEPITQEEQIMGTDESQESSMTDADDTQL
760 770 780 790 800 810
>>CCDS11509.1 CDC27 gene_id:996|Hs108|chr17 (824 aa)
initn: 496 init1: 370 opt: 401 Z-score: 474.4 bits: 98.3 E(32554): 4.2e-20
Smith-Waterman score: 405; 30.0% identity (62.7% similar) in 263 aa overlap (256-516:498-749)
230 240 250 260 270 280
pF1KE1 FFLAHIYTELQLIEEALQKYQNLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRK
..... ::. :: .. . .: ::.:.:.
CCDS11 EMGKGYLALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRR
470 480 490 500 510 520
290 300 310 320 330 340
pF1KE1 QDPYRIENMDTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAA
. ::.:.:. .:. :. . :: :...: ..:: :. :. :: .::. .:. :
CCDS11 IENYRVEGMEIYSTTLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAI
530 540 550 560 570 580
350 360 370 380 390 400
pF1KE1 LYFQRALKLNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEI
.::::....: : :.::.:::.. .. . :. .:.::.:: : : ::::::. :
CCDS11 KFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIY--
590 600 610 620 630 640
410 420 430 440 450 460
pF1KE1 LKMPFYCL--YYYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKMA
:. . : .....: .. :..: .: .: . :.. .: .: .. : ..
CCDS11 YKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVI-DPKN--
650 660 670 680 690 700
470 480 490 500 510 520
pF1KE1 LVKLAKLHEQLTESEQAAQCYIKYIQDIYSCGEIVEHLEESTAFRYLAQYYFKCKLWDEA
: :.:. . : . : . .:.. .:: .:: .. ... : :
CCDS11 --PLCKFHR--ASVLFANEKYKSALQELEELKQIVP--KESLVYFLIGKVYKKLGQTHLA
710 720 730 740 750
530 540 550 560 570 580
pF1KE1 STCAQKCCAFNDTREEGKALLRQILQLRNQGETPTTEVPAPFFLPASLSANNTPTRRVSP
CCDS11 LMNFSWAMDLDPKGANNQIKEAIDKRYLPDDEEPITQEEQIMGTDESQESSMTDADDTQL
760 770 780 790 800 810
>>CCDS45720.1 CDC27 gene_id:996|Hs108|chr17 (830 aa)
initn: 496 init1: 370 opt: 401 Z-score: 474.4 bits: 98.3 E(32554): 4.2e-20
Smith-Waterman score: 405; 30.0% identity (62.7% similar) in 263 aa overlap (256-516:504-755)
230 240 250 260 270 280
pF1KE1 FFLAHIYTELQLIEEALQKYQNLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRK
..... ::. :: .. . .: ::.:.:.
CCDS45 EMGKGYLALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRR
480 490 500 510 520 530
290 300 310 320 330 340
pF1KE1 QDPYRIENMDTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAA
. ::.:.:. .:. :. . :: :...: ..:: :. :. :: .::. .:. :
CCDS45 IENYRVEGMEIYSTTLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAI
540 550 560 570 580 590
350 360 370 380 390 400
pF1KE1 LYFQRALKLNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEI
.::::....: : :.::.:::.. .. . :. .:.::.:: : : ::::::. :
CCDS45 KFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIY--
600 610 620 630 640 650
410 420 430 440 450 460
pF1KE1 LKMPFYCL--YYYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKMA
:. . : .....: .. :..: .: .: . :.. .: .: .. : ..
CCDS45 YKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVI-DPKN--
660 670 680 690 700
470 480 490 500 510 520
pF1KE1 LVKLAKLHEQLTESEQAAQCYIKYIQDIYSCGEIVEHLEESTAFRYLAQYYFKCKLWDEA
: :.:. . : . : . .:.. .:: .:: .. ... : :
CCDS45 --PLCKFHR--ASVLFANEKYKSALQELEELKQIVP--KESLVYFLIGKVYKKLGQTHLA
710 720 730 740 750 760
530 540 550 560 570 580
pF1KE1 STCAQKCCAFNDTREEGKALLRQILQLRNQGETPTTEVPAPFFLPASLSANNTPTRRVSP
CCDS45 LMNFSWAMDLDPKGANNQIKEAIDKRYLPDDEEPITQEEQIMGTDESQESSMTDADDTQL
770 780 790 800 810 820
591 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:01:02 2016 done: Mon Nov 7 01:01:03 2016
Total Scan time: 2.680 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]