Result of FASTA (ccds) for
pFN21AE1541
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1541, 475 aa
1>>>pF1KE1541 475 - 475 aa - 475 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.8637+/-0.000992; mu= 1.2593+/- 0.061
mean_var=290.5501+/-57.699, 0's: 0 Z-trim(114.8): 5 B-trim: 0 in 0/53
Lambda= 0.075243
statistics sampled from 15330 (15334) to 15330 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.471), width: 16
Scan time: 3.080
The best scores are: opt bits E(32554)
CCDS41309.1 CAP1 gene_id:10487|Hs108|chr1 ( 475) 3070 346.2 4.4e-95
CCDS81304.1 CAP1 gene_id:10487|Hs108|chr1 ( 474) 3053 344.4 1.6e-94
CCDS4539.1 CAP2 gene_id:10486|Hs108|chr6 ( 477) 2013 231.5 1.5e-60
>>CCDS41309.1 CAP1 gene_id:10487|Hs108|chr1 (475 aa)
initn: 3070 init1: 3070 opt: 3070 Z-score: 1820.5 bits: 346.2 E(32554): 4.4e-95
Smith-Waterman score: 3070; 98.7% identity (98.9% similar) in 475 aa overlap (1-475:1-475)
10 20 30 40 50 60
pF1KE1 MADMQNLVERLERAVGRLEAVSHTSDMHRGYADSPSKAGAAPYVQAFDSLLAGPVAEYLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MADMQNLVERLERAVGRLEAVSHTSDMHRGYADSPSKAGAAPYVQAFDSLLAGPVAEYLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAENKLSDLLAPISEQIKEVITFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAENKLSDLLAPISEQIKEVITFRE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 DWVKAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELSGLPSGPSAGSGPPPPPPGPPPP
:::::::::::::::::::::::::::::::::::::::::::::::: :::::: ::::
CCDS41 DWVKAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELSGLPSGPSAGSCPPPPPPCPPPP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 PVSTSSGSDESASRSALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPVRSGPKPF
:::: : : ::::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PVSTISCSYESASRSSLFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPVRSGPKPF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 SAPKPQTSPSPKRATKKEPAVLELEGKKWRVENQENVSNLVIEDTELKQVAYIYKCVNTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SAPKPQTSPSPKRATKKEPAVLELEGKKWRVENQENVSNLVIEDTELKQVAYIYKCVNTT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYL
370 380 390 400 410 420
430 440 450 460 470
pF1KE1 SKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG
430 440 450 460 470
>>CCDS81304.1 CAP1 gene_id:10487|Hs108|chr1 (474 aa)
initn: 2825 init1: 2825 opt: 3053 Z-score: 1810.6 bits: 344.4 E(32554): 1.6e-94
Smith-Waterman score: 3053; 98.5% identity (98.7% similar) in 475 aa overlap (1-475:1-474)
10 20 30 40 50 60
pF1KE1 MADMQNLVERLERAVGRLEAVSHTSDMHRGYADSPSKAGAAPYVQAFDSLLAGPVAEYLK
::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
CCDS81 MADMQNLVERLERAVGRLEAVSHTSDMHRGYADSPSK-GAAPYVQAFDSLLAGPVAEYLK
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 ISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAENKLSDLLAPISEQIKEVITFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAENKLSDLLAPISEQIKEVITFRE
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHV
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 DWVKAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELSGLPSGPSAGSGPPPPPPGPPPP
:::::::::::::::::::::::::::::::::::::::::::::::: :::::: ::::
CCDS81 DWVKAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELSGLPSGPSAGSCPPPPPPCPPPP
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE1 PVSTSSGSDESASRSALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPVRSGPKPF
:::: : : ::::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PVSTISCSYESASRSSLFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPVRSGPKPF
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE1 SAPKPQTSPSPKRATKKEPAVLELEGKKWRVENQENVSNLVIEDTELKQVAYIYKCVNTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SAPKPQTSPSPKRATKKEPAVLELEGKKWRVENQENVSNLVIEDTELKQVAYIYKCVNTT
300 310 320 330 340 350
370 380 390 400 410 420
pF1KE1 LQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYL
360 370 380 390 400 410
430 440 450 460 470
pF1KE1 SKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG
420 430 440 450 460 470
>>CCDS4539.1 CAP2 gene_id:10486|Hs108|chr6 (477 aa)
initn: 2084 init1: 934 opt: 2013 Z-score: 1200.4 bits: 231.5 E(32554): 1.5e-60
Smith-Waterman score: 2013; 64.6% identity (84.4% similar) in 480 aa overlap (1-473:1-475)
10 20 30 40 50
pF1KE1 MADMQNLVERLERAVGRLEAVSHTSDMHRGYADSPSK--AGAAPYVQAFDSLLAGPVAEY
::.::.:::::::::.:::..: : : . ::.:: :.:::.:. . :::.
CCDS45 MANMQGLVERLERAVSRLESLSAESHRPPGNCGEVNGVIAGVAPSVEAFDKLMDSMVAEF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 LKISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAENKLSDLLAPISEQIKEVITF
:: :. ..:::. ::::::.... .::.:. ::: ::: :: .. :: ::::.:.:. ::
CCDS45 LKNSRILAGDVETHAEMVHSAFQAQRAFLLMASQYQQPHENDVAALLKPISEKIQEIQTF
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 REKNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKK
::.::::..::::::::::: ::::.:..:::::::::::::: ::::::::.:: : .
CCDS45 RERNRGSNMFNHLSAVSESIPALGWIAVSPKPGPYVKEMNDAATFYTNRVLKDYKHSDLR
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 HVDWVKAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELSGLPSGPSAGSG-PPPPPPGP
::::::.::.::.:::::::: :::::.::::::::. .:.. : :.: : :::::: :
CCDS45 HVDWVKSYLNIWSELQAYIKEHHTTGLTWSKTGPVASTVSAF-SVLSSGPGLPPPPPPLP
190 200 210 220 230
240 250 260 270 280 290
pF1KE1 PP--PPVSTSSGSDE--SASRSALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPV
:: ::. . :. : : ::::::::.::::.::..:.::.::.::.:::.:.::.: .
CCDS45 PPGPPPLFENEGKKEESSPSRSALFAQLNQGEAITKGLRHVTDDQKTYKNPSLRAQGGQT
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE1 RSGPKPFSAPKPQTSPSPKRATKKEPAVLELEGKKWRVENQENVSNLVIEDTELKQVAYI
.: : .:.: :::. . :. : :::::::::::: ::. ..::: .:::::::::
CCDS45 QS-PTKSHTPSP-TSPKSYPSQKHAP-VLELEGKKWRVEYQEDRNDLVISETELKQVAYI
300 310 320 330 340 350
360 370 380 390 400 410
pF1KE1 YKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKT
.:: ..:.:::::.::: .:::::::::::.::::::.:::.:...::::.:::::::::
CCDS45 FKCEKSTIQIKGKVNSIIIDNCKKLGLVFDNVVGIVEVINSQDIQIQVMGRVPTISINKT
360 370 380 390 400 410
420 430 440 450 460 470
pF1KE1 DGCHAYLSKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEI
.::: :::...::::::::::::::.::: . ::. :::.:::::: :.:.::.: .::
CCDS45 EGCHIYLSEDALDCEIVSAKSSEMNILIP-QDGDYREFPIPEQFKTAWDGSKLITEPAEI
420 430 440 450 460 470
pF1KE1 AG
CCDS45 MA
475 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:00:05 2016 done: Sun Nov 6 23:00:05 2016
Total Scan time: 3.080 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]