FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1540, 125 aa
  1>>>pF1KE1540 125 - 125 aa - 125 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4668+/-0.000708; mu= 11.1119+/- 0.043
 mean_var=76.4349+/-14.963, 0's: 0 Z-trim(110.1): 8  B-trim: 14 in 1/49
 Lambda= 0.146699
 statistics sampled from 11376 (11378) to 11376 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.35), width:  16
 Scan time:  1.650

The best scores are:                                      opt bits E(32554)
CCDS12423.1 PDCD5 gene_id:9141|Hs108|chr19         ( 125)  779 173.2 3.7e-44


>>CCDS12423.1 PDCD5 gene_id:9141|Hs108|chr19              (125 aa)
 initn: 779 init1: 779 opt: 779  Z-score: 906.3  bits: 173.2 E(32554): 3.7e-44
Smith-Waterman score: 779; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KE1 MADEELEALRRQRLAELQAKHGDPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MADEELEALRRQRLAELQAKHGDPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSD
               70        80        90       100       110       120

            
pF1KE1 EDDDY
       :::::
CCDS12 EDDDY
            




125 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:20:51 2016 done: Mon Nov  7 01:20:51 2016
 Total Scan time:  1.650 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]