FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1539, 313 aa
  1>>>pF1KE1539 313 - 313 aa - 313 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5108+/-0.00071; mu= 15.4510+/- 0.043
 mean_var=70.4556+/-14.045, 0's: 0 Z-trim(109.6): 12  B-trim: 0 in 0/52
 Lambda= 0.152798
 statistics sampled from 11019 (11022) to 11019 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.339), width:  16
 Scan time:  2.130

The best scores are:                                      opt bits E(32554)
CCDS3981.1 DIMT1 gene_id:27292|Hs108|chr5          ( 313) 2067 464.2 5.7e-131


>>CCDS3981.1 DIMT1 gene_id:27292|Hs108|chr5               (313 aa)
 initn: 2067 init1: 2067 opt: 2067  Z-score: 2464.8  bits: 464.2 E(32554): 5.7e-131
Smith-Waterman score: 2067; 100.0% identity (100.0% similar) in 313 aa overlap (1-313:1-313)

               10        20        30        40        50        60
pF1KE1 MPKVKSGAIGRRRGRQEQRRELKSAGGLMFNTGIGQHILKNPLIINSIIDKAALRPTDVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 MPKVKSGAIGRRRGRQEQRRELKSAGGLMFNTGIGQHILKNPLIINSIIDKAALRPTDVV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 LEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 LLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 AFKSSAVQQLLEKNYRIHCSVHNIIIPEDFSIADKIQQILTSTGFSDKRARSMDIDDFIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 AFKSSAVQQLLEKNYRIHCSVHNIIIPEDFSIADKIQQILTSTGFSDKRARSMDIDDFIR
              250       260       270       280       290       300

              310   
pF1KE1 LLHGFNAEGIHFS
       :::::::::::::
CCDS39 LLHGFNAEGIHFS
              310   




313 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:53:23 2016 done: Mon Nov  7 01:53:23 2016
 Total Scan time:  2.130 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]