Result of FASTA (omim) for
pFN21AE1536
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1536, 323 aa
1>>>pF1KE1536 323 - 323 aa - 323 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2928+/-0.000391; mu= 16.3902+/- 0.024
mean_var=74.7352+/-15.136, 0's: 0 Z-trim(112.4): 35 B-trim: 0 in 0/51
Lambda= 0.148358
statistics sampled from 21280 (21308) to 21280 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.25), width: 16
Scan time: 6.090
The best scores are: opt bits E(85289)
NP_001230 (OMIM: 601953) cyclin-H isoform 1 [Homo ( 323) 2129 465.1 8.5e-131
XP_011542008 (OMIM: 601953) PREDICTED: cyclin-H is ( 325) 2047 447.6 1.6e-125
XP_005248684 (OMIM: 601953) PREDICTED: cyclin-H is ( 329) 2047 447.6 1.7e-125
NP_001186118 (OMIM: 601953) cyclin-H isoform 2 [Ho ( 270) 1762 386.5 3.3e-107
XP_016865503 (OMIM: 601953) PREDICTED: cyclin-H is ( 272) 1680 369.0 6.3e-102
XP_005248686 (OMIM: 601953) PREDICTED: cyclin-H is ( 276) 1680 369.0 6.4e-102
XP_006715657 (OMIM: 123838) PREDICTED: cyclin-C is ( 282) 164 44.5 0.00031
NP_005181 (OMIM: 123838) cyclin-C isoform a [Homo ( 283) 164 44.5 0.00031
NP_444284 (OMIM: 168461,193300,254500) G1/S-specif ( 295) 164 44.5 0.00032
XP_011535577 (OMIM: 603544) PREDICTED: cyclin-K is ( 580) 156 43.0 0.0018
NP_001092872 (OMIM: 603544) cyclin-K [Homo sapiens ( 580) 156 43.0 0.0018
XP_005268211 (OMIM: 603544) PREDICTED: cyclin-K is ( 580) 156 43.0 0.0018
XP_016866925 (OMIM: 123838) PREDICTED: cyclin-C is ( 147) 139 39.0 0.0076
XP_011534534 (OMIM: 123838) PREDICTED: cyclin-C is ( 153) 139 39.0 0.0078
>>NP_001230 (OMIM: 601953) cyclin-H isoform 1 [Homo sapi (323 aa)
initn: 2129 init1: 2129 opt: 2129 Z-score: 2469.2 bits: 465.1 E(85289): 8.5e-131
Smith-Waterman score: 2129; 100.0% identity (100.0% similar) in 323 aa overlap (1-323:1-323)
10 20 30 40 50 60
pF1KE1 MYHNSSQKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYHNSSQKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 EKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 NRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDD
250 260 270 280 290 300
310 320
pF1KE1 DYVSKKSKHEEEEWTDDDLVESL
:::::::::::::::::::::::
NP_001 DYVSKKSKHEEEEWTDDDLVESL
310 320
>>XP_011542008 (OMIM: 601953) PREDICTED: cyclin-H isofor (325 aa)
initn: 2047 init1: 2047 opt: 2047 Z-score: 2374.3 bits: 447.6 E(85289): 1.6e-125
Smith-Waterman score: 2047; 100.0% identity (100.0% similar) in 311 aa overlap (1-311:1-311)
10 20 30 40 50 60
pF1KE1 MYHNSSQKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MYHNSSQKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 EKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 NRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDD
250 260 270 280 290 300
310 320
pF1KE1 DYVSKKSKHEEEEWTDDDLVESL
:::::::::::
XP_011 DYVSKKSKHEEIAKLWHQSKVHTYH
310 320
>>XP_005248684 (OMIM: 601953) PREDICTED: cyclin-H isofor (329 aa)
initn: 2047 init1: 2047 opt: 2047 Z-score: 2374.2 bits: 447.6 E(85289): 1.7e-125
Smith-Waterman score: 2047; 100.0% identity (100.0% similar) in 311 aa overlap (1-311:1-311)
10 20 30 40 50 60
pF1KE1 MYHNSSQKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MYHNSSQKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 EKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 NRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDD
250 260 270 280 290 300
310 320
pF1KE1 DYVSKKSKHEEEEWTDDDLVESL
:::::::::::
XP_005 DYVSKKSKHEEVCFTPKMNSKLFLLYILV
310 320
>>NP_001186118 (OMIM: 601953) cyclin-H isoform 2 [Homo s (270 aa)
initn: 1762 init1: 1762 opt: 1762 Z-score: 2045.8 bits: 386.5 E(85289): 3.3e-107
Smith-Waterman score: 1762; 100.0% identity (100.0% similar) in 270 aa overlap (54-323:1-270)
30 40 50 60 70 80
pF1KE1 ADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTA
::::::::::::::::::::::::::::::
NP_001 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTA
10 20 30
90 100 110 120 130 140
pF1KE1 CMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALEQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALEQI
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE1 LEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDA
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE1 YLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYE
160 170 180 190 200 210
270 280 290 300 310 320
pF1KE1 PPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEWTDDDLVESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEWTDDDLVESL
220 230 240 250 260 270
>>XP_016865503 (OMIM: 601953) PREDICTED: cyclin-H isofor (272 aa)
initn: 1680 init1: 1680 opt: 1680 Z-score: 1950.9 bits: 369.0 E(85289): 6.3e-102
Smith-Waterman score: 1680; 100.0% identity (100.0% similar) in 258 aa overlap (54-311:1-258)
30 40 50 60 70 80
pF1KE1 ADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTA
::::::::::::::::::::::::::::::
XP_016 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTA
10 20 30
90 100 110 120 130 140
pF1KE1 CMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALEQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALEQI
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE1 LEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDA
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE1 YLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYE
160 170 180 190 200 210
270 280 290 300 310 320
pF1KE1 PPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEWTDDDLVESL
::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDDDYVSKKSKHEEIAKLWHQSKVHT
220 230 240 250 260 270
XP_016 YH
>>XP_005248686 (OMIM: 601953) PREDICTED: cyclin-H isofor (276 aa)
initn: 1680 init1: 1680 opt: 1680 Z-score: 1950.8 bits: 369.0 E(85289): 6.4e-102
Smith-Waterman score: 1680; 100.0% identity (100.0% similar) in 258 aa overlap (54-311:1-258)
30 40 50 60 70 80
pF1KE1 ADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTA
::::::::::::::::::::::::::::::
XP_005 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTA
10 20 30
90 100 110 120 130 140
pF1KE1 CMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALEQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALEQI
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE1 LEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDA
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE1 YLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYE
160 170 180 190 200 210
270 280 290 300 310 320
pF1KE1 PPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEWTDDDLVESL
::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDDDYVSKKSKHEEVCFTPKMNSKLF
220 230 240 250 260 270
XP_005 LLYILV
>>XP_006715657 (OMIM: 123838) PREDICTED: cyclin-C isofor (282 aa)
initn: 227 init1: 127 opt: 164 Z-score: 197.0 bits: 44.5 E(85289): 0.00031
Smith-Waterman score: 220; 27.5% identity (56.7% similar) in 247 aa overlap (44-279:28-259)
20 30 40 50 60 70
pF1KE1 SSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKP
: :: .: : .. . . . .:
XP_006 MAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLK-
10 20 30 40 50
80 90 100 110 120
pF1KE1 AMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNV-SSPQFVG-----
. ..:..:: .:::::: :. : .. ::.::: ::.::.: :. ....
XP_006 -LRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSV
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 -NLRES---PLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILEN
. : : : ...::: :. :.. .. :::..::::. .. :. . .:
XP_006 LKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLL--
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 PEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRT
: : . : . : :: ::: : .::: : : : ..... . . : .
XP_006 PLAWRIVNDTY--R---TDLCLLYPPFMIAL-ACLHVAC---VVQQKDARQ--WFAELSV
180 190 200 210 220
250 260 270 280 290 300
pF1KE1 CLSQLLDIMKSMRNLVKKYEP-PRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDDDY
. ..:.:.. . .: .... . .:.:.. .:. .
XP_006 DMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPKPPPNRNSLSDSPLVAGPEAAR
230 240 250 260 270 280
310 320
pF1KE1 VSKKSKHEEEEWTDDDLVESL
>>NP_005181 (OMIM: 123838) cyclin-C isoform a [Homo sapi (283 aa)
initn: 247 init1: 127 opt: 164 Z-score: 197.0 bits: 44.5 E(85289): 0.00031
Smith-Waterman score: 220; 27.5% identity (56.7% similar) in 247 aa overlap (44-279:28-259)
20 30 40 50 60 70
pF1KE1 SSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKP
: :: .: : .. . . . .:
NP_005 MAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLK-
10 20 30 40 50
80 90 100 110 120
pF1KE1 AMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNV-SSPQFVG-----
. ..:..:: .:::::: :. : .. ::.::: ::.::.: :. ....
NP_005 -LRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSV
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 -NLRES---PLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILEN
. : : : ...::: :. :.. .. :::..::::. .. :. . .:
NP_005 LKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLL--
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 PEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRT
: : . : . : :: ::: : .::: : : : ..... . . : .
NP_005 PLAWRIVNDTY--R---TDLCLLYPPFMIAL-ACLHVAC---VVQQKDARQ--WFAELSV
180 190 200 210 220
250 260 270 280 290 300
pF1KE1 CLSQLLDIMKSMRNLVKKYEP-PRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDDDY
. ..:.:.. . .: .... . .:.:.. .:. .
NP_005 DMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPKPPPNSEGEQGPNGSQNSSYSQ
230 240 250 260 270 280
310 320
pF1KE1 VSKKSKHEEEEWTDDDLVESL
NP_005 S
>>NP_444284 (OMIM: 168461,193300,254500) G1/S-specific c (295 aa)
initn: 184 init1: 77 opt: 164 Z-score: 196.7 bits: 44.5 E(85289): 0.00032
Smith-Waterman score: 177; 24.0% identity (51.2% similar) in 283 aa overlap (10-269:3-273)
10 20 30 40 50
pF1KE1 MYHNSSQKRHWTFSSE-EQLARLRADAN----RKFRCKAVANGKVLPNDPVFLEPHEEM-
: . : : . : ::: : .: :. :. : ..:.
NP_444 MEHQLLCCEVETIRRAYPDANLLNDRVLRAMLKAEETCAPSVSYFKCVQKEVL
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 -TLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLAC
.. : .:: : . . : : :. :: . : . . ... :: :.:
NP_444 PSMRKIVATWMLEVCE--EQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVAS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 KVDEFNVSSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLID
:. : . . . .. . : ..:..::::...:...: . .:. .: ::
NP_444 KMKETIPLTAEKLCIYTDNSIRPE----ELLQMELLLVNKLKWNLAAMTPHDFIEHFL--
120 130 140 150 160
180 190 200 210 220 230
pF1KE1 LKTRYP-ILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMES--
...: :: .:.:: :. :. : .. ::..: ... :. :....:
NP_444 --SKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVV--AAVQGLNLRSPN
170 180 190 200 210 220
240 250 260 270
pF1KE1 -YLSE-------SLMLKEN----RTCLSQLLDIMKS-MRNLVKKYEPPRSEEVAVLKQKL
.:: : ..: . :.: :. ...: .:. ....: .::
NP_444 NFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALLESSLRQAQQNMDPKAAEEEEEEEEEV
230 240 250 260 270 280
280 290 300 310 320
pF1KE1 ERCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEWTDDDLVESL
NP_444 DLACTPTDVRDVDI
290
>>XP_011535577 (OMIM: 603544) PREDICTED: cyclin-K isofor (580 aa)
initn: 89 init1: 89 opt: 156 Z-score: 183.3 bits: 43.0 E(85289): 0.0018
Smith-Waterman score: 156; 26.3% identity (54.6% similar) in 194 aa overlap (39-223:29-216)
10 20 30 40 50 60
pF1KE1 RHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEK--RLLE
: : . : :: . : .: .. :..
XP_011 MKENKENSSPSVTSANLDHTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFI-
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 FCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCA-FLACKVDEFNVSSPQF
: . .. ....:. .::.:::. .: .. :: . .: ::: ::.: . ..
XP_011 FDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQF-PRYVTGACCLFLAGKVEETPKKCKDI
60 70 80 90 100 110
130 140 150 160 170
pF1KE1 VGNLR----ESPLGQ--EKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYP
. . : . .:: . :... : .:.: ..: : :..::. . . .::
XP_011 IKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKN
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 ILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLK
... : . : :.: : : . : ::. :.. :.:
XP_011 KIQK---LVQMAWTFVNDSLCTTLSLQWEPEIIAV-AVMYLAGRLCKFEIQEWTSKPMYR
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE1 ENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELALNVITKKRKGYED
XP_011 RWWEQFVQDVPVDVLEDICHQILDLYSQGKQQMPHHTPHQLQQPPSLQPTPQVPQVQQSQ
240 250 260 270 280 290
323 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:21:56 2016 done: Mon Nov 7 02:21:57 2016
Total Scan time: 6.090 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]