Result of FASTA (omim) for
pFN21AE1534
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1534, 94 aa
1>>>pF1KE1534 94 - 94 aa - 94 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9419+/-0.000313; mu= 10.3220+/- 0.019
mean_var=53.5290+/-10.672, 0's: 0 Z-trim(115.5): 40 B-trim: 80 in 1/55
Lambda= 0.175299
statistics sampled from 25924 (25963) to 25924 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.304), width: 16
Scan time: 4.030
The best scores are: opt bits E(85289)
NP_005400 (OMIM: 604852) C-X-C motif chemokine 11 ( 94) 617 163.4 4.9e-41
NP_001289052 (OMIM: 604852) C-X-C motif chemokine ( 106) 579 153.8 4.2e-38
NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 p ( 125) 217 62.3 1.8e-10
NP_001556 (OMIM: 147310) C-X-C motif chemokine 10 ( 98) 194 56.4 8e-09
NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 p ( 107) 147 44.6 3.3e-05
NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 p ( 107) 142 43.3 7.9e-05
NP_001502 (OMIM: 155730) growth-regulated alpha pr ( 107) 127 39.5 0.0011
NP_002695 (OMIM: 121010) platelet basic protein pr ( 128) 126 39.3 0.0015
NP_000575 (OMIM: 146930) interleukin-8 precursor [ ( 99) 116 36.7 0.007
NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 p ( 114) 116 36.7 0.0079
>>NP_005400 (OMIM: 604852) C-X-C motif chemokine 11 isof (94 aa)
initn: 617 init1: 617 opt: 617 Z-score: 857.8 bits: 163.4 E(85289): 4.9e-41
Smith-Waterman score: 617; 100.0% identity (100.0% similar) in 94 aa overlap (1-94:1-94)
10 20 30 40 50 60
pF1KE1 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI
10 20 30 40 50 60
70 80 90
pF1KE1 EVIITLKENKGQRCLNPKSKQARLIIKKVERKNF
::::::::::::::::::::::::::::::::::
NP_005 EVIITLKENKGQRCLNPKSKQARLIIKKVERKNF
70 80 90
>>NP_001289052 (OMIM: 604852) C-X-C motif chemokine 11 i (106 aa)
initn: 579 init1: 579 opt: 579 Z-score: 805.0 bits: 153.8 E(85289): 4.2e-38
Smith-Waterman score: 579; 97.8% identity (97.8% similar) in 91 aa overlap (1-91:1-91)
10 20 30 40 50 60
pF1KE1 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI
10 20 30 40 50 60
70 80 90
pF1KE1 EVIITLKENKGQRCLNPKSKQARLIIKKVERKNF
::::::::::::::::::::::::::: ::
NP_001 EVIITLKENKGQRCLNPKSKQARLIIKLKERIFKNIKTYEVLEKSI
70 80 90 100
>>NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 precu (125 aa)
initn: 205 init1: 140 opt: 217 Z-score: 309.1 bits: 62.3 E(85289): 1.8e-10
Smith-Waterman score: 217; 37.6% identity (71.0% similar) in 93 aa overlap (1-92:1-92)
10 20 30 40 50
pF1KE1 MSVKGMAIALAVILCATV-VQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDK
:. .:. . :..:: . . ::: :. ..::: ::. . .... ... . . :: .:.:
NP_002 MKKSGVLFLLGIILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEK
10 20 30 40 50 60
60 70 80 90
pF1KE1 IEVIITLKENKGQRCLNPKSKQARLIIKKVERKNF
::.: ::: : : :::: : ... .::: :..
NP_002 IEIIATLK-NGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRS
70 80 90 100 110
NP_002 RQKKTT
120
>>NP_001556 (OMIM: 147310) C-X-C motif chemokine 10 prec (98 aa)
initn: 196 init1: 182 opt: 194 Z-score: 279.4 bits: 56.4 E(85289): 8e-09
Smith-Waterman score: 194; 31.5% identity (64.1% similar) in 92 aa overlap (1-92:1-92)
10 20 30 40 50 60
pF1KE1 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI
:. .. : ..: . .:: :. . :: ::. . . :. ..:: :. :. : ..
NP_001 MNQTAILICCLIFLTLSGIQGVPLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFCPRV
10 20 30 40 50 60
70 80 90
pF1KE1 EVIITLKENKGQRCLNPKSKQARLIIKKVERKNF
:.: :.:.. .:::::.:: . ..: : ..
NP_001 EIIATMKKKGEKRCLNPESKAIKNLLKAVSKERSKRSP
70 80 90
>>NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 precu (107 aa)
initn: 94 init1: 56 opt: 147 Z-score: 214.5 bits: 44.6 E(85289): 3.3e-05
Smith-Waterman score: 147; 31.4% identity (68.6% similar) in 86 aa overlap (6-89:18-100)
10 20 30 40
pF1KE1 MSVKGMAIALAVILCATV-VQGFPMFKRGRCLCIGPGVKAVKVADIEK
.:. : ... :. . : :. . :: :. ...... .:..
NP_002 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCL-QTLQGIHLKNIQS
10 20 30 40 50
50 60 70 80 90
pF1KE1 ASIMYPSNNCDKIEVIITLKENKGQR-CLNPKSKQARLIIKKVERKNF
... :. .: . ::: :::. ::. :::: : ... ::.:.
NP_002 VKVKSPGPHCAQTEVIATLKN--GQKACLNPASPMVKKIIEKMLKNGKSN
60 70 80 90 100
>>NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 precu (107 aa)
initn: 101 init1: 59 opt: 142 Z-score: 207.7 bits: 43.3 E(85289): 7.9e-05
Smith-Waterman score: 142; 29.5% identity (67.0% similar) in 88 aa overlap (6-92:18-103)
10 20 30 40
pF1KE1 MSVKGMAIALAVILCATV-VQGFPMFKRGRCLCIGPGVKAVKVADIEK
.:. : ... :. . : . . :: :. ...... .:..
NP_002 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCL-QTLQGIHLKNIQS
10 20 30 40 50
50 60 70 80 90
pF1KE1 ASIMYPSNNCDKIEVIITLKENKGQRCLNPKSKQARLIIKKVERKNF
... :. .: . ::: :::..: . :::: : ... ::.:. :
NP_002 VNVRSPGPHCAQTEVIATLKNGK-KACLNPASPMVQKIIEKILNKGSTN
60 70 80 90 100
>>NP_001502 (OMIM: 155730) growth-regulated alpha protei (107 aa)
initn: 92 init1: 53 opt: 127 Z-score: 187.2 bits: 39.5 E(85289): 0.0011
Smith-Waterman score: 127; 32.8% identity (70.5% similar) in 61 aa overlap (29-89:42-100)
10 20 30 40 50
pF1KE1 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCD
:: :. ..... .:..... :. .:
NP_001 NPRLLRVALLLLLLVAAGRRAAGASVATELRCQCLQT-LQGIHPKNIQSVNVKSPGPHCA
20 30 40 50 60 70
60 70 80 90
pF1KE1 KIEVIITLKENKGQRCLNPKSKQARLIIKKVERKNF
. ::: :::... . :::: : .. ::.:.
NP_001 QTEVIATLKNGR-KACLNPASPIVKKIIEKMLNSDKSN
80 90 100
>>NP_002695 (OMIM: 121010) platelet basic protein prepro (128 aa)
initn: 137 init1: 66 opt: 126 Z-score: 184.6 bits: 39.3 E(85289): 0.0015
Smith-Waterman score: 126; 26.2% identity (72.3% similar) in 65 aa overlap (24-88:57-119)
10 20 30 40 50
pF1KE1 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYP
.. . ::.:: ..... .:.. ..
NP_002 SLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKT-TSGIHPKNIQSLEVIGK
30 40 50 60 70 80
60 70 80 90
pF1KE1 SNNCDKIEVIITLKENKGQRCLNPKSKQARLIIKKVERKNF
...:...::: :::... . ::.: . . . :..:
NP_002 GTHCNQVEVIATLKDGR-KICLDPDAPRIKKIVQKKLAGDESAD
90 100 110 120
>>NP_000575 (OMIM: 146930) interleukin-8 precursor [Homo (99 aa)
initn: 112 init1: 49 opt: 116 Z-score: 172.7 bits: 36.7 E(85289): 0.007
Smith-Waterman score: 116; 25.8% identity (60.8% similar) in 97 aa overlap (1-92:1-95)
10 20 30 40 50
pF1KE1 MSVKGMAIAL--AVILCATVVQG--FPMF-KRGRCLCIGPGVKAVKVADIEKASIMYPSN
:. : .:.:: : .. :.. .: .: :. :: :: : . :.. .. .
NP_000 MTSK-LAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGP
10 20 30 40 50
60 70 80 90
pF1KE1 NCDKIEVIITLKENKGQRCLNPKSKQARLIIKKVERKNF
.: . :.:. :.... . ::.:: . .. ...: ..
NP_000 HCANTEIIVKLSDGR-ELCLDPKENWVQRVVEKFLKRAENS
60 70 80 90
>>NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 precu (114 aa)
initn: 53 init1: 34 opt: 116 Z-score: 171.7 bits: 36.7 E(85289): 0.0079
Smith-Waterman score: 116; 31.1% identity (67.2% similar) in 61 aa overlap (29-89:48-106)
10 20 30 40 50
pF1KE1 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCD
:: :. .. :. : : ... . .:.
NP_002 LCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLR-VNPKTIGKLQVFPAGPQCS
20 30 40 50 60 70
60 70 80 90
pF1KE1 KIEVIITLKENKGQRCLNPKSKQARLIIKKVERKNF
:.::. .::..: : ::.:.. . .:.:.
NP_002 KVEVVASLKNGK-QVCLDPEAPFLKKVIQKILDSGNKKN
80 90 100 110
94 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:20:44 2016 done: Mon Nov 7 02:20:44 2016
Total Scan time: 4.030 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]