FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1532, 122 aa
  1>>>pF1KE1532 122 - 122 aa - 122 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1406+/-0.000607; mu= 11.0290+/- 0.036
 mean_var=55.2997+/-11.164, 0's: 0 Z-trim(110.4): 7  B-trim: 0 in 0/52
 Lambda= 0.172470
 statistics sampled from 11586 (11591) to 11586 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.356), width:  16
 Scan time:  1.440

The best scores are:                                      opt bits E(32554)
CCDS7835.1 SAA1 gene_id:6288|Hs108|chr11           ( 122)  828 213.3   3e-56
CCDS7833.1 SAA2 gene_id:6289|Hs108|chr11           ( 122)  782 201.9 8.2e-53
CCDS76391.1 SAA4 gene_id:100528017|Hs108|chr11     ( 208)  510 134.3 3.1e-32
CCDS44548.1 SAA2 gene_id:6289|Hs108|chr11          (  83)  505 132.9 3.3e-32
CCDS7832.1 SAA4 gene_id:6291|Hs108|chr11           ( 130)  477 126.0 6.1e-30


>>CCDS7835.1 SAA1 gene_id:6288|Hs108|chr11                (122 aa)
 initn: 828 init1: 828 opt: 828  Z-score: 1123.5  bits: 213.3 E(32554): 3e-56
Smith-Waterman score: 828; 96.7% identity (100.0% similar) in 122 aa overlap (1-122:1-122)

               10        20        30        40        50        60
pF1KE1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DAAKRGPGGVWAAEAISDARENIQRFFGHGAEDSLADQAADEWGRSGKDPNHFRPAGLPE
       :::::::::.::::.:.:::::::::::::::::::::::.:::::::::::::::::::
CCDS78 DAAKRGPGGAWAAEVITDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPE
               70        80        90       100       110       120

         
pF1KE1 KY
       ::
CCDS78 KY
         

>>CCDS7833.1 SAA2 gene_id:6289|Hs108|chr11                (122 aa)
 initn: 782 init1: 782 opt: 782  Z-score: 1061.6  bits: 201.9 E(32554): 8.2e-53
Smith-Waterman score: 782; 91.8% identity (99.2% similar) in 122 aa overlap (1-122:1-122)

               10        20        30        40        50        60
pF1KE1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
       ::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DAAKRGPGGVWAAEAISDARENIQRFFGHGAEDSLADQAADEWGRSGKDPNHFRPAGLPE
       :::::::::.::::.::.:::::::. :.:::::::::::..:::::.::::::::::::
CCDS78 DAAKRGPGGAWAAEVISNARENIQRLTGRGAEDSLADQAANKWGRSGRDPNHFRPAGLPE
               70        80        90       100       110       120

         
pF1KE1 KY
       ::
CCDS78 KY
         

>>CCDS76391.1 SAA4 gene_id:100528017|Hs108|chr11          (208 aa)
 initn: 957 init1: 510 opt: 510  Z-score: 692.1  bits: 134.3 E(32554): 3.1e-32
Smith-Waterman score: 510; 93.8% identity (97.5% similar) in 80 aa overlap (1-80:1-80)

               10        20        30        40        50        60
pF1KE1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
       ::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DAAKRGPGGVWAAEAISDARENIQRFFGHGAEDSLADQAADEWGRSGKDPNHFRPAGLPE
       :::::::::.::::.::  :                                        
CCDS76 DAAKRGPGGAWAAEVISTMRLFTGIVFCSLVMGVTSESWRSFFKEALQGVGDMGRAYWDI
               70        80        90       100       110       120

>--
 initn: 477 init1: 312 opt: 467  Z-score: 634.3  bits: 123.6 E(32554): 5.2e-29
Smith-Waterman score: 467; 55.5% identity (81.2% similar) in 128 aa overlap (3-122:81-208)

                                           10        20        30  
pF1KE1                             MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGA
                                     :.::.::::::.::.:.:. ::. ::..:.
CCDS76 DKYFHARGNYDAAKRGPGGAWAAEVISTMRLFTGIVFCSLVMGVTSESWRSFFKEALQGV
               60        70        80        90       100       110

             40        50        60        70        80            
pF1KE1 RDMWRAYSDMREANYIGSDKYFHARGNYDAAKRGPGGVWAAEAISDARENIQ-----RFF
        :: ::: :.  .:. .:..:..::::::::.:::::::::. :: .:  .:      .:
CCDS76 GDMGRAYWDIMISNHQNSNRYLYARGNYDAAQRGPGGVWAAKLISRSRVYLQGLIDCYLF
              120       130       140       150       160       170

        90          100       110       120  
pF1KE1 GHGA---EDSLADQAADEWGRSGKDPNHFRPAGLPEKY
       :...   ::: ... :.:::::::::..::: :::.::
CCDS76 GNSSTVLEDSKSNEKAEEWGRSGKDPDRFRPDGLPKKY
              180       190       200        

>>CCDS44548.1 SAA2 gene_id:6289|Hs108|chr11               (83 aa)
 initn: 505 init1: 505 opt: 505  Z-score: 691.8  bits: 132.9 E(32554): 3.3e-32
Smith-Waterman score: 505; 96.1% identity (100.0% similar) in 77 aa overlap (1-77:1-77)

               10        20        30        40        50        60
pF1KE1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
       ::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DAAKRGPGGVWAAEAISDARENIQRFFGHGAEDSLADQAADEWGRSGKDPNHFRPAGLPE
       :::::::::.::::.::                                           
CCDS44 DAAKRGPGGAWAAEVISLFSAEL                                     
               70        80                                        

>>CCDS7832.1 SAA4 gene_id:6291|Hs108|chr11                (130 aa)
 initn: 477 init1: 312 opt: 477  Z-score: 651.0  bits: 126.0 E(32554): 6.1e-30
Smith-Waterman score: 477; 55.4% identity (81.5% similar) in 130 aa overlap (1-122:1-130)

               10        20        30        40        50        60
pF1KE1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
       :.:.::.::::::.::.:.:. ::. ::..:. :: ::: :.  .:. .:..:..:::::
CCDS78 MRLFTGIVFCSLVMGVTSESWRSFFKEALQGVGDMGRAYWDIMISNHQNSNRYLYARGNY
               10        20        30        40        50        60

               70        80             90          100       110  
pF1KE1 DAAKRGPGGVWAAEAISDARENIQ-----RFFGHGA---EDSLADQAADEWGRSGKDPNH
       :::.:::::::::. :: .:  .:      .::...   ::: ... :.:::::::::..
CCDS78 DAAQRGPGGVWAAKLISRSRVYLQGLIDCYLFGNSSTVLEDSKSNEKAEEWGRSGKDPDR
               70        80        90       100       110       120

            120  
pF1KE1 FRPAGLPEKY
       ::: :::.::
CCDS78 FRPDGLPKKY
              130




122 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:14:13 2016 done: Sun Nov  6 23:14:13 2016
 Total Scan time:  1.440 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]