FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1522, 592 aa
  1>>>pF1KE1522 592 - 592 aa - 592 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6894+/-0.00113; mu= 16.7548+/- 0.067
 mean_var=64.0506+/-12.416, 0's: 0 Z-trim(101.5): 22  B-trim: 2 in 1/47
 Lambda= 0.160255
 statistics sampled from 6555 (6556) to 6555 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.552), E-opt: 0.2 (0.201), width:  16
 Scan time:  3.240

The best scores are:                                      opt bits E(32554)
CCDS2398.1 ATIC gene_id:471|Hs108|chr2             ( 592) 3834 895.7       0


>>CCDS2398.1 ATIC gene_id:471|Hs108|chr2                  (592 aa)
 initn: 3834 init1: 3834 opt: 3834  Z-score: 4786.8  bits: 895.7 E(32554):    0
Smith-Waterman score: 3834; 100.0% identity (100.0% similar) in 592 aa overlap (1-592:1-592)

               10        20        30        40        50        60
pF1KE1 MAPGQLALFSVSDKTGLVEFARNLTALGLNLVASGGTAKALRDAGLAVRDVSELTGFPEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MAPGQLALFSVSDKTGLVEFARNLTALGLNLVASGGTAKALRDAGLAVRDVSELTGFPEM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LGGRVKTLHPAVHAGILARNIPEDNADMARLDFNLIRVVACNLYPFVKTVASPGVTVEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 LGGRVKTLHPAVHAGILARNIPEDNADMARLDFNLIRVVACNLYPFVKTVASPGVTVEEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VEQIDIGGVTLLRAAAKNHARVTVVCEPEDYVVVSTEMQSSESKDTSLETRRQLALKAFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 VEQIDIGGVTLLRAAAKNHARVTVVCEPEDYVVVSTEMQSSESKDTSLETRRQLALKAFT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 HTAQYDEAISDYFRKQYSKGVSQMPLRYGMNPHQTPAQLYTLQPKLPITVLNGAPGFINL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 HTAQYDEAISDYFRKQYSKGVSQMPLRYGMNPHQTPAQLYTLQPKLPITVLNGAPGFINL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 CDALNAWQLVKELKEALGIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTPIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 CDALNAWQLVKELKEALGIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTPIS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 AAYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIIAPGYEEEALTILSKKKNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 AAYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIIAPGYEEEALTILSKKKNG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 NYCVLQMDQSYKPDENEVRTLFGLHLSQKRNNGVVDKSLFSNVVTKNKDLPESALRDLIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 NYCVLQMDQSYKPDENEVRTLFGLHLSQKRNNGVVDKSLFSNVVTKNKDLPESALRDLIV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 ATIAVKYTQSNSVCYAKNGQVIGIGAGQQSRIHCTRLAGDKANYWWLRHHPQVLSMKFKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 ATIAVKYTQSNSVCYAKNGQVIGIGAGQQSRIHCTRLAGDKANYWWLRHHPQVLSMKFKT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 GVKRAEISNAIDQYVTGTIGEDEDLIKWKALFEEVPELLTEAEKKEWVEKLTEVSISSDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 GVKRAEISNAIDQYVTGTIGEDEDLIKWKALFEEVPELLTEAEKKEWVEKLTEVSISSDA
              490       500       510       520       530       540

              550       560       570       580       590  
pF1KE1 FFPFRDNVDRAKRSGVAYIAAPSGSAADKVVIEACDELGIILAHTNLRLFHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 FFPFRDNVDRAKRSGVAYIAAPSGSAADKVVIEACDELGIILAHTNLRLFHH
              550       560       570       580       590  




592 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:05:50 2016 done: Mon Nov  7 02:05:50 2016
 Total Scan time:  3.240 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]