Result of FASTA (ccds) for
pFN21AE1521
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1521, 329 aa
1>>>pF1KE1521 329 - 329 aa - 329 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7597+/-0.000803; mu= 14.2617+/- 0.049
mean_var=86.1163+/-17.377, 0's: 0 Z-trim(109.1): 58 B-trim: 87 in 1/51
Lambda= 0.138208
statistics sampled from 10632 (10690) to 10632 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.328), width: 16
Scan time: 2.090
The best scores are: opt bits E(32554)
CCDS3009.1 CD86 gene_id:942|Hs108|chr3 ( 329) 2202 448.7 2.9e-126
CCDS43138.1 CD86 gene_id:942|Hs108|chr3 ( 323) 2152 438.7 2.9e-123
CCDS56273.1 CD86 gene_id:942|Hs108|chr3 ( 247) 1657 340.0 1.2e-93
CCDS74991.1 CD86 gene_id:942|Hs108|chr3 ( 275) 1485 305.7 2.8e-83
CCDS56272.1 CD86 gene_id:942|Hs108|chr3 ( 217) 1308 270.3 9.6e-73
CCDS2989.1 CD80 gene_id:941|Hs108|chr3 ( 288) 277 64.9 9.2e-11
>>CCDS3009.1 CD86 gene_id:942|Hs108|chr3 (329 aa)
initn: 2202 init1: 2202 opt: 2202 Z-score: 2380.2 bits: 448.7 E(32554): 2.9e-126
Smith-Waterman score: 2202; 99.4% identity (100.0% similar) in 329 aa overlap (1-329:1-329)
10 20 30 40 50 60
pF1KE1 MDPQCTMGLSNILFVMAFLLSGAAPLKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MDPQCTMGLSNILFVMAFLLSGAAPLKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 IRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPKKMSVLLRTKNSTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 IRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPKKMSVLLRTKNSTI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 EYDGIMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTRLLSSPFSIELEDPQ
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EYDGVMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTRLLSSPFSIELEDPQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 PPPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPRNSYKCGTNTMEREESEQTKKREK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PPPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPRNSYKCGTNTMEREESEQTKKREK
250 260 270 280 290 300
310 320
pF1KE1 IHIPERSDETQRVFKSSKTSSCDKSDTCF
:::::::::.:::::::::::::::::::
CCDS30 IHIPERSDEAQRVFKSSKTSSCDKSDTCF
310 320
>>CCDS43138.1 CD86 gene_id:942|Hs108|chr3 (323 aa)
initn: 2152 init1: 2152 opt: 2152 Z-score: 2326.4 bits: 438.7 E(32554): 2.9e-123
Smith-Waterman score: 2152; 99.4% identity (100.0% similar) in 323 aa overlap (7-329:1-323)
10 20 30 40 50 60
pF1KE1 MDPQCTMGLSNILFVMAFLLSGAAPLKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MGLSNILFVMAFLLSGAAPLKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQ
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 ENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGM
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 IRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPKKMSVLLRTKNSTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPKKMSVLLRTKNSTI
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 EYDGIMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTRLLSSPFSIELEDPQ
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EYDGVMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTRLLSSPFSIELEDPQ
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE1 PPPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPRNSYKCGTNTMEREESEQTKKREK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PPPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPRNSYKCGTNTMEREESEQTKKREK
240 250 260 270 280 290
310 320
pF1KE1 IHIPERSDETQRVFKSSKTSSCDKSDTCF
:::::::::.:::::::::::::::::::
CCDS43 IHIPERSDEAQRVFKSSKTSSCDKSDTCF
300 310 320
>>CCDS56273.1 CD86 gene_id:942|Hs108|chr3 (247 aa)
initn: 1657 init1: 1657 opt: 1657 Z-score: 1794.7 bits: 340.0 E(32554): 1.2e-93
Smith-Waterman score: 1657; 99.2% identity (100.0% similar) in 247 aa overlap (83-329:1-247)
60 70 80 90 100 110
pF1KE1 LVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCII
::::::::::::::::::::::::::::::
CCDS56 MGRTSFDSDSWTLRLHNLQIKDKGLYQCII
10 20 30
120 130 140 150 160 170
pF1KE1 HHKKPTGMIRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPKKMSVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 HHKKPTGMIRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPKKMSVL
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE1 LRTKNSTIEYDGIMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTRLLSSPF
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LRTKNSTIEYDGVMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTRLLSSPF
100 110 120 130 140 150
240 250 260 270 280 290
pF1KE1 SIELEDPQPPPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPRNSYKCGTNTMEREES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SIELEDPQPPPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPRNSYKCGTNTMEREES
160 170 180 190 200 210
300 310 320
pF1KE1 EQTKKREKIHIPERSDETQRVFKSSKTSSCDKSDTCF
:::::::::::::::::.:::::::::::::::::::
CCDS56 EQTKKREKIHIPERSDEAQRVFKSSKTSSCDKSDTCF
220 230 240
>>CCDS74991.1 CD86 gene_id:942|Hs108|chr3 (275 aa)
initn: 1485 init1: 1485 opt: 1485 Z-score: 1608.7 bits: 305.7 E(32554): 2.8e-83
Smith-Waterman score: 1682; 84.5% identity (85.1% similar) in 323 aa overlap (7-329:1-275)
10 20 30 40 50 60
pF1KE1 MDPQCTMGLSNILFVMAFLLSGAAPLKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MGLSNILFVMAFLLSGAAPLKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQ
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 ENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGM
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 IRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPKKMSVLLRTKNSTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 IRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPKKMSVLLRTKNSTI
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 EYDGIMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTRLLSSPFSIELEDPQ
::::.:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 EYDGVMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTRLLSSPFSI------
180 190 200 210 220
250 260 270 280 290 300
pF1KE1 PPPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPRNSYKCGTNTMEREESEQTKKREK
::::::::::::::::::
CCDS74 ------------------------------------------GTNTMEREESEQTKKREK
230 240
310 320
pF1KE1 IHIPERSDETQRVFKSSKTSSCDKSDTCF
:::::::::.:::::::::::::::::::
CCDS74 IHIPERSDEAQRVFKSSKTSSCDKSDTCF
250 260 270
>>CCDS56272.1 CD86 gene_id:942|Hs108|chr3 (217 aa)
initn: 1434 init1: 1308 opt: 1308 Z-score: 1419.4 bits: 270.3 E(32554): 9.6e-73
Smith-Waterman score: 1308; 99.0% identity (100.0% similar) in 196 aa overlap (134-329:22-217)
110 120 130 140 150 160
pF1KE1 DKGLYQCIIHHKKPTGMIRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGY
::::::::::::::::::::::::::::::
CCDS56 MDPQCTMGLSNILFVMAFLLSANFSQPEIVPISNITENVYINLTCSSIHGY
10 20 30 40 50
170 180 190 200 210 220
pF1KE1 PEPKKMSVLLRTKNSTIEYDGIMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETD
:::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
CCDS56 PEPKKMSVLLRTKNSTIEYDGVMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETD
60 70 80 90 100 110
230 240 250 260 270 280
pF1KE1 KTRLLSSPFSIELEDPQPPPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPRNSYKCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KTRLLSSPFSIELEDPQPPPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPRNSYKCG
120 130 140 150 160 170
290 300 310 320
pF1KE1 TNTMEREESEQTKKREKIHIPERSDETQRVFKSSKTSSCDKSDTCF
::::::::::::::::::::::::::.:::::::::::::::::::
CCDS56 TNTMEREESEQTKKREKIHIPERSDEAQRVFKSSKTSSCDKSDTCF
180 190 200 210
>>CCDS2989.1 CD80 gene_id:941|Hs108|chr3 (288 aa)
initn: 144 init1: 54 opt: 277 Z-score: 306.7 bits: 64.9 E(32554): 9.2e-11
Smith-Waterman score: 277; 25.9% identity (58.0% similar) in 274 aa overlap (12-278:24-277)
10 20 30 40
pF1KE1 MDPQCTMGLSNILFVMAFLLSGAAPLKIQAYFNETADLPCQFANSQNQ
.: .. . ::. ... .:.: : : : . .
CCDS29 MGHTRRQGTSPSKCPYLNFFQLLVLAGLSHFCSGV--IHVTKEVKEVATLSCGH-NVSVE
10 20 30 40 50
50 60 70 80 90 100
pF1KE1 SLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFD-SDSWTLRLHNLQIKDKGL
:.. ..:: ....::. .. : .. .: .:: :: ... .. . :. .:.:
CCDS29 ELAQTRIYWQKEKKMVLT-MMSGDM---NIWPEYKNRTIFDITNNLSIVILALRPSDEGT
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE1 YQCIIHHKKPTGMIRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPK
:.:.. . . .. : : . ::: :.: : : . : :. . ::. :.:::.
CCDS29 YECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIR-RIICSTSGGFPEPH
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE1 KMSVLLRTKNSTIEYDGIMQK-SQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTR
.: : .:. : ..: ::: :::: :: .:. ..:.: ...:... . :
CCDS29 -LSWL---ENGE-ELNAINTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYGHLR
180 190 200 210 220
230 240 250 260 270 280
pF1KE1 LLSSPFSIELEDPQPPPDHI-P-WITAVLPT---VIICVMVFCLILWKWKKKKRPRNSYK
. .. :. . . ::.. : : ... . .:: ...:. . ..: ::
CCDS29 V-NQTFNWNTTKQEHFPDNLLPSWAITLISVNGIFVICCLTYCFA---PRCRERRRNERL
230 240 250 260 270 280
290 300 310 320
pF1KE1 CGTNTMEREESEQTKKREKIHIPERSDETQRVFKSSKTSSCDKSDTCF
CCDS29 RRESVRPV
329 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 22:14:24 2016 done: Sun Nov 6 22:14:25 2016
Total Scan time: 2.090 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]