FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1520, 118 aa
  1>>>pF1KE1520 118 - 118 aa - 118 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9905+/-0.000231; mu= 3.9389+/- 0.015
 mean_var=112.9988+/-22.745, 0's: 0 Z-trim(125.4): 3  B-trim: 360 in 1/59
 Lambda= 0.120653
 statistics sampled from 48948 (48951) to 48948 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.868), E-opt: 0.2 (0.574), width:  16
 Scan time:  5.460

The best scores are:                                      opt bits E(85289)
NP_004086 (OMIM: 602223) eukaryotic translation in ( 118)  806 149.2 1.4e-36
NP_004087 (OMIM: 602224) eukaryotic translation in ( 120)  415 81.1 4.5e-16
NP_003723 (OMIM: 603483) eukaryotic translation in ( 100)  328 66.0 1.4e-11


>>NP_004086 (OMIM: 602223) eukaryotic translation initia  (118 aa)
 initn: 806 init1: 806 opt: 806  Z-score: 777.5  bits: 149.2 E(85289): 1.4e-36
Smith-Waterman score: 806; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KE1 MSGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLM
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KE1 ECRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKRAGGEESQFEMDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ECRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKRAGGEESQFEMDI
               70        80        90       100       110        

>>NP_004087 (OMIM: 602224) eukaryotic translation initia  (120 aa)
 initn: 475 init1: 319 opt: 415  Z-score: 409.5  bits: 81.1 E(85289): 4.5e-16
Smith-Waterman score: 415; 57.1% identity (82.4% similar) in 119 aa overlap (2-118:4-120)

                 10        20        30        40        50        
pF1KE1   MSGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKF
          :.::. . . ::::: :: :...:..:::  :: :::::::::::::::::::::::
NP_004 MSSSAGSGHQPSQSRAIP-TRTVAISDAAQLPH-DYCTTPGGTLFSTTPGGTRIIYDRKF
               10         20        30         40        50        

       60        70        80          90       100       110      
pF1KE1 LMECRNSPVTKTPPRDLPTIPGVTSPSS--DEPPMEASQSHLRNSPEDKRAGGEESQFEM
       :.. ::::...:::  ::.:::::::..  ..  .:... .  :. . :.: :...::::
NP_004 LLDRRNSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDRKHAVGDDAQFEM
       60        70        80        90       100       110        

         
pF1KE1 DI
       ::
NP_004 DI
      120

>>NP_003723 (OMIM: 603483) eukaryotic translation initia  (100 aa)
 initn: 379 init1: 295 opt: 328  Z-score: 328.9  bits: 66.0 E(85289): 1.4e-11
Smith-Waterman score: 330; 50.8% identity (66.9% similar) in 118 aa overlap (1-118:1-100)

               10        20        30        40        50        60
pF1KE1 MSGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLM
       :: ..::   :   ::. :        :::   :::::::::..:::::::::::::::.
NP_003 MSTSTSC---P---IPGGRD-------QLPDC-YSTTPGGTLYATTPGGTRIIYDRKFLL
                     10                20        30        40      

               70        80        90       100       110        
pF1KE1 ECRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKRAGGEESQFEMDI
       ::.:::...:::  :: :::::.:    :    :. .  .  : ..   ...::::::
NP_003 ECKNSPIARTPPCCLPQIPGVTTP----PTAPLSKLEELKEQETEEEIPDDAQFEMDI
         50        60        70            80        90       100




118 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 20:13:27 2016 done: Sun Nov  6 20:13:28 2016
 Total Scan time:  5.460 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]