FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1520, 118 aa
  1>>>pF1KE1520 118 - 118 aa - 118 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6240+/-0.000534; mu= 6.1195+/- 0.033
 mean_var=108.4326+/-21.282, 0's: 0 Z-trim(117.6): 4  B-trim: 0 in 0/54
 Lambda= 0.123167
 statistics sampled from 18415 (18418) to 18415 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.861), E-opt: 0.2 (0.566), width:  16
 Scan time:  1.930

The best scores are:                                      opt bits E(32554)
CCDS6100.1 EIF4EBP1 gene_id:1978|Hs108|chr8        ( 118)  806 151.9 8.3e-38
CCDS7303.1 EIF4EBP2 gene_id:1979|Hs108|chr10       ( 120)  415 82.5 6.9e-17
CCDS4226.1 EIF4EBP3 gene_id:8637|Hs108|chr5        ( 100)  328 67.0 2.7e-12


>>CCDS6100.1 EIF4EBP1 gene_id:1978|Hs108|chr8             (118 aa)
 initn: 806 init1: 806 opt: 806  Z-score: 792.2  bits: 151.9 E(32554): 8.3e-38
Smith-Waterman score: 806; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KE1 MSGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MSGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLM
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KE1 ECRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKRAGGEESQFEMDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 ECRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKRAGGEESQFEMDI
               70        80        90       100       110        

>>CCDS7303.1 EIF4EBP2 gene_id:1979|Hs108|chr10            (120 aa)
 initn: 475 init1: 319 opt: 415  Z-score: 416.6  bits: 82.5 E(32554): 6.9e-17
Smith-Waterman score: 415; 57.1% identity (82.4% similar) in 119 aa overlap (2-118:4-120)

                 10        20        30        40        50        
pF1KE1   MSGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKF
          :.::. . . ::::: :: :...:..:::  :: :::::::::::::::::::::::
CCDS73 MSSSAGSGHQPSQSRAIP-TRTVAISDAAQLPH-DYCTTPGGTLFSTTPGGTRIIYDRKF
               10         20        30         40        50        

       60        70        80          90       100       110      
pF1KE1 LMECRNSPVTKTPPRDLPTIPGVTSPSS--DEPPMEASQSHLRNSPEDKRAGGEESQFEM
       :.. ::::...:::  ::.:::::::..  ..  .:... .  :. . :.: :...::::
CCDS73 LLDRRNSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDRKHAVGDDAQFEM
       60        70        80        90       100       110        

         
pF1KE1 DI
       ::
CCDS73 DI
      120

>>CCDS4226.1 EIF4EBP3 gene_id:8637|Hs108|chr5             (100 aa)
 initn: 379 init1: 295 opt: 328  Z-score: 334.3  bits: 67.0 E(32554): 2.7e-12
Smith-Waterman score: 330; 50.8% identity (66.9% similar) in 118 aa overlap (1-118:1-100)

               10        20        30        40        50        60
pF1KE1 MSGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLM
       :: ..::   :   ::. :        :::   :::::::::..:::::::::::::::.
CCDS42 MSTSTSC---P---IPGGRD-------QLPDC-YSTTPGGTLYATTPGGTRIIYDRKFLL
                     10                20        30        40      

               70        80        90       100       110        
pF1KE1 ECRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKRAGGEESQFEMDI
       ::.:::...:::  :: :::::.:    :    :. .  .  : ..   ...::::::
CCDS42 ECKNSPIARTPPCCLPQIPGVTTP----PTAPLSKLEELKEQETEEEIPDDAQFEMDI
         50        60        70            80        90       100




118 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 20:13:26 2016 done: Sun Nov  6 20:13:27 2016
 Total Scan time:  1.930 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]