FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1519, 464 aa
  1>>>pF1KE1519 464 - 464 aa - 464 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.9001+/-0.00135; mu= -14.8564+/- 0.082
 mean_var=848.6325+/-178.243, 0's: 0 Z-trim(117.1): 157  B-trim: 550 in 2/54
 Lambda= 0.044027
 statistics sampled from 17703 (17852) to 17703 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.548), width:  16
 Scan time:  2.980

The best scores are:                                      opt bits E(32554)
CCDS12084.1 SF3A2 gene_id:8175|Hs108|chr19         ( 464) 3479 235.9 6.7e-62


>>CCDS12084.1 SF3A2 gene_id:8175|Hs108|chr19              (464 aa)
 initn: 3479 init1: 3479 opt: 3479  Z-score: 1224.7  bits: 235.9 E(32554): 6.7e-62
Smith-Waterman score: 3479; 100.0% identity (100.0% similar) in 464 aa overlap (1-464:1-464)

               10        20        30        40        50        60
pF1KE1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 KQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKMEKPPAPPSLPAGPPGVKRPPPPLMNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKMEKPPAPPSLPAGPPGVKRPPPPLMNG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 LPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 VHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 APGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 APGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPG
              370       380       390       400       410       420

              430       440       450       460    
pF1KE1 VHPQPPGVHPSNPGVHPPTPMPPMLRPPLPSEGPGNIPPPPPTN
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VHPQPPGVHPSNPGVHPPTPMPPMLRPPLPSEGPGNIPPPPPTN
              430       440       450       460    




464 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:26:11 2016 done: Mon Nov  7 02:26:11 2016
 Total Scan time:  2.980 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]