FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1511, 322 aa
  1>>>pF1KE1511 322 - 322 aa - 322 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6016+/-0.000803; mu= 13.9991+/- 0.048
 mean_var=60.4435+/-12.172, 0's: 0 Z-trim(106.8): 15  B-trim: 0 in 0/50
 Lambda= 0.164968
 statistics sampled from 9159 (9167) to 9159 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.282), width:  16
 Scan time:  2.640

The best scores are:                                      opt bits E(32554)
CCDS5145.1 ARG1 gene_id:383|Hs108|chr6             ( 322) 2133 515.9 1.6e-146
CCDS59038.1 ARG1 gene_id:383|Hs108|chr6            ( 330) 2107 509.8 1.2e-144
CCDS9785.1 ARG2 gene_id:384|Hs108|chr14            ( 354) 1336 326.3 2.3e-89


>>CCDS5145.1 ARG1 gene_id:383|Hs108|chr6                  (322 aa)
 initn: 2133 init1: 2133 opt: 2133  Z-score: 2743.8  bits: 515.9 E(32554): 1.6e-146
Smith-Waterman score: 2133; 100.0% identity (100.0% similar) in 322 aa overlap (1-322:1-322)

               10        20        30        40        50        60
pF1KE1 MSAKSRTIGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKEQECDVKDYGDLPFADIPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 MSAKSRTIGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKEQECDVKDYGDLPFADIPN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DSPFQIVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARVHPDLGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 DSPFQIVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARVHPDLGV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 IWVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 IWVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 DVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFDVDGLDPSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 DVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFDVDGLDPSF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 TPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEVTRTVNTAVAIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 TPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEVTRTVNTAVAIT
              250       260       270       280       290       300

              310       320  
pF1KE1 LACFGLAREGNHKPIDYLNPPK
       ::::::::::::::::::::::
CCDS51 LACFGLAREGNHKPIDYLNPPK
              310       320  

>>CCDS59038.1 ARG1 gene_id:383|Hs108|chr6                 (330 aa)
 initn: 2119 init1: 1858 opt: 2107  Z-score: 2710.2  bits: 509.8 E(32554): 1.2e-144
Smith-Waterman score: 2107; 97.6% identity (97.6% similar) in 330 aa overlap (1-322:1-330)

               10        20        30        40                50  
pF1KE1 MSAKSRTIGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKEQ--------ECDVKDYGD
       :::::::::::::::::::::::::::::::::::::::::::        :::::::::
CCDS59 MSAKSRTIGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKEQVTQNFLILECDVKDYGD
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KE1 LPFADIPNDSPFQIVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LPFADIPNDSPFQIVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHA
               70        80        90       100       110       120

            120       130       140       150       160       170  
pF1KE1 RVHPDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 RVHPDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAK
              130       140       150       160       170       180

            180       190       200       210       220       230  
pF1KE1 DIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFD
              190       200       210       220       230       240

            240       250       260       270       280       290  
pF1KE1 VDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEVTRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEVTRT
              250       260       270       280       290       300

            300       310       320  
pF1KE1 VNTAVAITLACFGLAREGNHKPIDYLNPPK
       ::::::::::::::::::::::::::::::
CCDS59 VNTAVAITLACFGLAREGNHKPIDYLNPPK
              310       320       330

>>CCDS9785.1 ARG2 gene_id:384|Hs108|chr14                 (354 aa)
 initn: 1353 init1: 1110 opt: 1336  Z-score: 1718.0  bits: 326.3 E(32554): 2.3e-89
Smith-Waterman score: 1336; 60.1% identity (85.4% similar) in 316 aa overlap (7-321:25-340)

                                 10        20        30        40  
pF1KE1                   MSAKSRTIGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKE
                               ....::::::.:: : :::.::...:.:::...:. 
CCDS97 MSLRGSLSRLLQTRVHSILKKSVHSVAVIGAPFSQGQKRKGVEHGPAAIREAGLMKRLSS
               10        20        30        40        50        60

             50        60         70        80        90       100 
pF1KE1 QECDVKDYGDLPFADIPNDSPFQ-IVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDH
         : .::.::: :. .:.:. .. .. :::::: :...::  :... ..:   ..:::::
CCDS97 LGCHLKDFGDLSFTPVPKDDLYNNLIVNPRSVGLANQELAEVVSRAVSDGYSCVTLGGDH
               70        80        90       100       110       120

             110       120       130       140       150       160 
pF1KE1 SLAIGSISGHARVHPDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPG
       :::::.::::::  ::: :.:::::.::::::::.:::::::::::::.::. :.:..::
CCDS97 SLAIGTISGHARHCPDLCVVWVDAHADINTPLTTSSGNLHGQPVSFLLRELQDKVPQLPG
              130       140       150       160       170       180

             170       180       190       200       210       220 
pF1KE1 FSWVTPCISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLG
       :::. ::::. .::::::::::: ::.:::.  :.:::: ..::::: ::::.:.. :.:
CCDS97 FSWIKPCISSASIVYIGLRDVDPPEHFILKNYDIQYFSMRDIDRLGIQKVMERTFDLLIG
              190       200       210       220       230       240

             230       240       250       260       270       280 
pF1KE1 RKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPS
       ...::::::::.:..::...::::::::::::::::.::.:::..:::::.::..::::.
CCDS97 KRQRPIHLSFDIDAFDPTLAPATGTPVVGGLTYREGMYIAEEIHNTGLLSALDLVEVNPQ
              250       260       270       280       290       300

             290       300       310       320               
pF1KE1 LGKTPEEVTRTVNTAVAITLACFGLAREGNHKPIDYLNPPK             
       :. . ::.  :.: :: .  . :: .:::.:   : :  :              
CCDS97 LATSEEEAKTTANLAVDVIASSFGQTREGGHIVYDQLPTPSSPDESENQARVRI
              310       320       330       340       350    




322 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:44:30 2016 done: Mon Nov  7 00:44:31 2016
 Total Scan time:  2.640 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]