Result of FASTA (omim) for
pFN21AE1509
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1509, 366 aa
1>>>pF1KE1509 366 - 366 aa - 366 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9146+/-0.000323; mu= 19.9100+/- 0.020
mean_var=88.3414+/-17.664, 0's: 0 Z-trim(117.0): 140 B-trim: 0 in 0/54
Lambda= 0.136456
statistics sampled from 28398 (28566) to 28398 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.335), width: 16
Scan time: 8.850
The best scores are: opt bits E(85289)
NP_001229971 (OMIM: 142840,177900,609423) HLA clas ( 366) 2326 467.7 1.8e-131
NP_002108 (OMIM: 142840,177900,609423) HLA class I ( 366) 2322 466.9 3.1e-131
NP_005505 (OMIM: 106300,142830,608579) major histo ( 362) 2191 441.1 1.8e-123
NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 2096 422.4 7.8e-118
NP_001229687 (OMIM: 142800,608579) HLA class I his ( 365) 2062 415.7 8e-116
XP_016885777 (OMIM: 142800,608579) PREDICTED: HLA ( 362) 2051 413.6 3.6e-115
XP_005275388 (OMIM: 142800,608579) PREDICTED: HLA ( 391) 2051 413.6 3.8e-115
NP_002118 (OMIM: 142871,600807) HLA class I histoc ( 338) 1908 385.4 1e-106
XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA ( 343) 1908 385.4 1e-106
NP_005507 (OMIM: 143010) HLA class I histocompatib ( 358) 1895 382.9 6.3e-106
XP_011512859 (OMIM: 106300,142830,608579) PREDICTE ( 323) 1873 378.5 1.2e-104
XP_016866298 (OMIM: 143010) PREDICTED: HLA class I ( 359) 1862 376.4 5.7e-104
XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 1855 375.0 1.5e-103
XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 1855 375.1 1.6e-103
XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435) 1855 375.1 1.7e-103
NP_001091949 (OMIM: 143110) HLA class I histocompa ( 442) 1855 375.1 1.7e-103
NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 1848 373.6 3.7e-103
XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 1831 370.2 3.8e-102
XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 1823 368.8 1.3e-101
XP_016866296 (OMIM: 143010) PREDICTED: HLA class I ( 399) 1814 367.0 4.2e-101
XP_016866297 (OMIM: 143010) PREDICTED: HLA class I ( 399) 1814 367.0 4.2e-101
XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 1245 254.8 1.9e-67
XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 1238 253.3 4e-67
NP_001091948 (OMIM: 143110) HLA class I histocompa ( 254) 1074 221.1 2.2e-57
NP_001522 (OMIM: 600764) major histocompatibility ( 341) 784 164.1 4.2e-40
XP_016866307 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 776 162.4 1e-39
XP_016866306 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 776 162.4 1e-39
XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 759 159.2 1.3e-38
NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 759 159.2 1.3e-38
NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 750 157.4 4.3e-38
NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 711 149.7 8.6e-36
NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298) 666 140.8 3.8e-33
NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 600 127.8 2.8e-29
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 553 118.5 1.7e-26
NP_001181929 (OMIM: 600764) major histocompatibili ( 249) 530 114.0 3.8e-25
NP_001181964 (OMIM: 600764) major histocompatibili ( 214) 529 113.7 4e-25
NP_000238 (OMIM: 600169) MHC class I polypeptide-r ( 383) 514 111.0 4.5e-24
NP_005922 (OMIM: 602436) MHC class I polypeptide-r ( 383) 506 109.4 1.4e-23
NP_001170990 (OMIM: 600169) MHC class I polypeptid ( 332) 499 108.0 3.2e-23
NP_001276089 (OMIM: 602436) MHC class I polypeptid ( 351) 476 103.5 7.6e-22
NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365) 432 94.9 3.2e-19
NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365) 432 94.9 3.2e-19
NP_001181928 (OMIM: 600764) major histocompatibili ( 296) 427 93.8 5.5e-19
NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256) 412 90.7 3.8e-18
NP_620579 (OMIM: 104300,176100,176200,235200,61263 ( 168) 399 88.0 1.7e-17
NP_620577 (OMIM: 104300,176100,176200,235200,61263 ( 246) 384 85.2 1.7e-16
NP_620575 (OMIM: 104300,176100,176200,235200,61263 ( 334) 384 85.4 2.1e-16
NP_001297142 (OMIM: 600764) major histocompatibili ( 178) 373 82.9 6.2e-16
NP_620572 (OMIM: 104300,176100,176200,235200,61263 ( 242) 371 82.7 9.9e-16
NP_001276082 (OMIM: 600169) MHC class I polypeptid ( 235) 360 80.5 4.4e-15
>>NP_001229971 (OMIM: 142840,177900,609423) HLA class I (366 aa)
initn: 2326 init1: 2326 opt: 2326 Z-score: 2481.2 bits: 467.7 E(85289): 1.8e-131
Smith-Waterman score: 2326; 93.2% identity (97.3% similar) in 366 aa overlap (1-366:1-366)
10 20 30 40 50 60
pF1KE1 MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVRF
:::::::.:.:::::.:::::::::::::::: ::::::::::::::.::::::::::::
NP_001 MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQ
:::::::::::::::::::::::::::::.::::::.:::::::::::::::: ::::::
NP_001 DSDAASPRGEPRAPWVEQEGPEYWDRETQNYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 WMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARAAEQQ
::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
NP_001 RMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 RAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHEATLRCWALGFYPAEITLT
::::::::::::::::::::::::::: :::::::: .::::::::::::::::::::::
NP_001 RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP
::::::::::::::::::::::::::::::::::::.:::::::.::::: ::::: :::
NP_001 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 SSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGGKGGSCSQAASSNSAQGSDES
::::::::.:::::::::.:::::::::...:::::::::::::::::: ::::::::::
NP_001 SSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAACSNSAQGSDES
310 320 330 340 350 360
pF1KE1 LIACKA
::.:::
NP_001 LITCKA
>>NP_002108 (OMIM: 142840,177900,609423) HLA class I his (366 aa)
initn: 2322 init1: 2322 opt: 2322 Z-score: 2477.0 bits: 466.9 E(85289): 3.1e-131
Smith-Waterman score: 2322; 93.2% identity (97.0% similar) in 366 aa overlap (1-366:1-366)
10 20 30 40 50 60
pF1KE1 MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVRF
:::::::.:.:::::.:::::::::::::::: ::::::::::::::.::::::::::::
NP_002 MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQ
::::::::::::::::::::::::::::::::::::.:::::::::::::::: ::::::
NP_002 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 WMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARAAEQQ
: ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
NP_002 RMSGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 RAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHEATLRCWALGFYPAEITLT
::::::::::::::::::::::::::: :::::::: .::::::::::::::::::::::
NP_002 RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP
::::::::::::::::::::::::::::::::::::.:::::::.::::: ::::: :::
NP_002 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 SSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGGKGGSCSQAASSNSAQGSDES
::::::::.:::::::::.:::::::::...:::::::::::::::::: ::::::::::
NP_002 SSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAACSNSAQGSDES
310 320 330 340 350 360
pF1KE1 LIACKA
::.:::
NP_002 LITCKA
>>NP_005505 (OMIM: 106300,142830,608579) major histocomp (362 aa)
initn: 2249 init1: 2008 opt: 2191 Z-score: 2337.6 bits: 441.1 E(85289): 1.8e-123
Smith-Waterman score: 2191; 89.0% identity (94.5% similar) in 363 aa overlap (1-363:1-362)
10 20 30 40 50 60
pF1KE1 MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVRF
: ::::::..::::.::::::::: :::::::::.::::::::::::.::::::::::::
NP_005 MLVMAPRTVLLLLSAALALTETWAGSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQ
:::::::: ::::::.::::::::::.:: :: :::::: ::::::::::::::::::::
NP_005 DSDAASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 WMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARAAEQQ
:::::.:::::::::.:: ::::::::::::::::::::::::::::::::::: :::.
NP_005 SMYGCDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 RAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHEATLRCWALGFYPAEITLT
:::::: :::::::::::::. :.::. :::::::: .::::::::::::::::::::::
NP_005 RAYLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEATLRCWALGFYPAEITLT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP
:::::::::::::::::::::: ::::::::::::::::::::::::::::.::::::::
NP_005 WQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 SSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGGKGGSCSQAASSNSAQGSDES
::: :.::::::::::::::. :.:::::.:::::::::::::: :::: :.:::::: :
NP_005 SSQSTVPIVGIVAGLAVLAVV-VIGAVVAAVMCRRKSSGGKGGSYSQAACSDSAQGSDVS
310 320 330 340 350
pF1KE1 LIACKA
: :
NP_005 LTA
360
>>NP_002107 (OMIM: 142800,608579) HLA class I histocompa (365 aa)
initn: 1953 init1: 1927 opt: 2096 Z-score: 2236.5 bits: 422.4 E(85289): 7.8e-118
Smith-Waterman score: 2096; 84.4% identity (93.4% similar) in 365 aa overlap (1-365:1-364)
10 20 30 40 50 60
pF1KE1 MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVRF
: :::::::.::::::::::.::: :::::::.:.:::::::::::::::::::::::::
NP_002 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQ
:::::: : ::::::.:::::::::.::.. : :.:::::.: .::::::::::::::.:
NP_002 DSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 WMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARAAEQQ
:::::.: :::.:::: :.::::::::::::::::::::: :::::.::::::. :::
NP_002 IMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 RAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHEATLRCWALGFYPAEITLT
::::.::::::::::::::::::::.. ::::.::: .::::::::::::::::::::::
NP_002 RAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP
:::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
NP_002 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 SSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGGKGGSCSQAASSNSAQGSDES
:::::::::::.:::..:... . :::::.:: ::::: :::: .:::::.:::::: :
NP_002 SSQPTIPIVGIIAGLVLLGAV-ITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVS
310 320 330 340 350
pF1KE1 LIACKA
: :::
NP_002 LTACKV
360
>>NP_001229687 (OMIM: 142800,608579) HLA class I histoco (365 aa)
initn: 1948 init1: 1893 opt: 2062 Z-score: 2200.3 bits: 415.7 E(85289): 8e-116
Smith-Waterman score: 2062; 82.7% identity (93.7% similar) in 365 aa overlap (1-365:1-364)
10 20 30 40 50 60
pF1KE1 MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVRF
: :::::::.::::::::::.::: :::::::.:.:::::::::::::::::::::::::
NP_001 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQ
:::::: . ::::::.:::::::::.::...: ..::::..: .::::::::: ::::.:
NP_001 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 WMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARAAEQQ
:::::.:::::.:::: :.::::::::::::::::::::: :::::.:::::..::::.
NP_001 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 RAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHEATLRCWALGFYPAEITLT
:.:::: ::. ::::::::::::::.. ::::.::: .::::::::::::::::::::::
NP_001 RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP
:::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
NP_001 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 SSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGGKGGSCSQAASSNSAQGSDES
:::::::::::.:::..:... . :::::.:: ::::: :::: .:::::.:::::: :
NP_001 SSQPTIPIVGIIAGLVLLGAV-ITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVS
310 320 330 340 350
pF1KE1 LIACKA
: :::
NP_001 LTACKV
360
>>XP_016885777 (OMIM: 142800,608579) PREDICTED: HLA clas (362 aa)
initn: 1910 init1: 1884 opt: 2051 Z-score: 2188.7 bits: 413.6 E(85289): 3.6e-115
Smith-Waterman score: 2051; 83.4% identity (92.8% similar) in 362 aa overlap (4-365:1-361)
10 20 30 40 50 60
pF1KE1 MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVRF
::::::.::::::::::.::: :::::::.:.:::::::::::::::::::::::::
XP_016 MAPRTLVLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQ
:::::: : ::::::.::::::::: ::.: : ..:: ::.: .::::::::::::::.:
XP_016 DSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQ
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 WMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARAAEQQ
:::::.: : :.:::: : ::::::::::.:::::::::: ::: :..:::::..:::
XP_016 RMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 RAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHEATLRCWALGFYPAEITLT
:::::::::::::::::::::::::.. ::::.::: :::::::::::::.:::::::::
XP_016 RAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP
::::::::::::::::::::::::::::::::::::.::::::::::::::.::::::::
XP_016 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE1 SSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGGKGGSCSQAASSNSAQGSDES
:::::::::::.:::...... . :::::.:: ::::: :::: ::::::.:::::: :
XP_016 SSQPTIPIVGIIAGLVLFGAV-ITGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDVS
300 310 320 330 340 350
pF1KE1 LIACKA
: :::
XP_016 LTACKV
360
>>XP_005275388 (OMIM: 142800,608579) PREDICTED: HLA clas (391 aa)
initn: 1910 init1: 1884 opt: 2051 Z-score: 2188.3 bits: 413.6 E(85289): 3.8e-115
Smith-Waterman score: 2051; 83.4% identity (92.8% similar) in 362 aa overlap (4-365:1-361)
10 20 30 40 50 60
pF1KE1 MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVRF
::::::.::::::::::.::: :::::::.:.:::::::::::::::::::::::::
XP_005 MAPRTLVLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQ
:::::: : ::::::.::::::::: ::.: : ..:: ::.: .::::::::::::::.:
XP_005 DSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQ
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 WMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARAAEQQ
:::::.: : :.:::: : ::::::::::.:::::::::: ::: :..:::::..:::
XP_005 RMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 RAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHEATLRCWALGFYPAEITLT
:::::::::::::::::::::::::.. ::::.::: :::::::::::::.:::::::::
XP_005 RAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP
::::::::::::::::::::::::::::::::::::.::::::::::::::.::::::::
XP_005 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE1 SSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGGKGGSCSQAASSNSAQGSDES
:::::::::::.:::...... . :::::.:: ::::: :::: ::::::.:::::: :
XP_005 SSQPTIPIVGIIAGLVLFGAV-ITGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDVS
300 310 320 330 340 350
pF1KE1 LIACKA
: :::
XP_005 LTACKGESLEGLMCVGCWAEQWTQLCYGVSFHWMY
360 370 380 390
>>NP_002118 (OMIM: 142871,600807) HLA class I histocompa (338 aa)
initn: 1926 init1: 1877 opt: 1908 Z-score: 2036.9 bits: 385.4 E(85289): 1e-106
Smith-Waterman score: 1908; 83.1% identity (93.2% similar) in 338 aa overlap (1-338:1-337)
10 20 30 40 50 60
pF1KE1 MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVRF
: :::::::.:::::::.:::::: ::::::: .::::::::::::::.:::::::::::
NP_002 MVVMAPRTLFLLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDTQFVRF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQ
:::.: :: :::::::::::::::..::.. : .:::::..:..::::::::::.:::::
NP_002 DSDSACPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 WMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARAAEQQ
:: ::::: ::::::::.: :::::::.::::::::::::::::::..:: ::: .:::.
NP_002 WMIGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAANVAEQR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 RAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHEATLRCWALGFYPAEITLT
::::::::::::.:::::::: ::::. :::::::: : :.:::::::::::::::: ::
NP_002 RAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPAEIILT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP
:::::::::::.:::::::::::::::::::::::::::::::::::::::::: :::.
NP_002 WQRDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLMLRWKQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 SSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGGKGGSCSQAASSNSAQGSDES
:: :::::.::::::.:::.. : ::.::.:. :.:::
NP_002 SSLPTIPIMGIVAGLVVLAAV-VTGAAVAAVLWRKKSSD
310 320 330
pF1KE1 LIACKA
>>XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA clas (343 aa)
initn: 1926 init1: 1877 opt: 1908 Z-score: 2036.8 bits: 385.4 E(85289): 1e-106
Smith-Waterman score: 1908; 83.1% identity (93.2% similar) in 338 aa overlap (1-338:6-342)
10 20 30 40 50
pF1KE1 MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPRFIAVGYVDDT
: :::::::.:::::::.:::::: ::::::: .::::::::::::::.::::::
XP_016 MKTPRMVVMAPRTLFLLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 QFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAG
::::::::.: :: :::::::::::::::..::.. : .:::::..:..::::::::::.
XP_016 QFVRFDSDSACPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEAS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 SHTLQWMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAR
::::::: ::::: ::::::::.: :::::::.::::::::::::::::::..:: :::
XP_016 SHTLQWMIGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAAN
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 AAEQQRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHEATLRCWALGFYPA
.:::.::::::::::::.:::::::: ::::. :::::::: : :.::::::::::::::
XP_016 VAEQRRAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPA
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 EITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLT
:: :::::::::::::.::::::::::::::::::::::::::::::::::::::::::
XP_016 EIILTWQRDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLM
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE1 LRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGGKGGSCSQAASSNSAQ
:::. :: :::::.::::::.:::.. : ::.::.:. :.:::
XP_016 LRWKQSSLPTIPIMGIVAGLVVLAAV-VTGAAVAAVLWRKKSSD
310 320 330 340
360
pF1KE1 GSDESLIACKA
>>NP_005507 (OMIM: 143010) HLA class I histocompatibilit (358 aa)
initn: 1799 init1: 1799 opt: 1895 Z-score: 2022.8 bits: 382.9 E(85289): 6.3e-106
Smith-Waterman score: 1895; 78.0% identity (91.5% similar) in 355 aa overlap (4-358:1-354)
10 20 30 40 50 60
pF1KE1 MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVRF
:. ::.:::: :::::.::: :::..::.:.::::::::::::.::::::::::::
NP_005 MVDGTLLLLLSEALALTQTWAGSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRF
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQ
:.:::::: :::::.:::: :::::::.. . :: ::.::.::::::::::::::::
NP_005 DNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQ
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 WMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARAAEQQ
::.::.::::::.::::.: :::::::..::::::::::.::::::...: . : ::.:
NP_005 WMHGCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQ
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 RAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHEATLRCWALGFYPAEITLT
::::: ::::::..:::.::::: . : :::::::: .::::::::::::::::::::::
NP_005 RAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATLRCWALGFYPAEITLT
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP
::.::: .:::::::::::::::::::::::::::::::::::::::::::::.::::.:
NP_005 WQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKP
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE1 SSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGGKGGSCSQAASSNSAQGSDES
.::::::::::.:::..:. . : :::::.:. :.::::::::: :.: :.:::::.
NP_005 ASQPTIPIVGIIAGLVLLGSV-VSGAVVAAVIWRKKSSGGKGGSYSKAEWSDSAQGSESH
300 310 320 330 340 350
pF1KE1 LIACKA
NP_005 SL
366 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:44:02 2016 done: Mon Nov 7 02:44:04 2016
Total Scan time: 8.850 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]