Result of FASTA (omim) for
pFN21AE1503
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1503, 257 aa
1>>>pF1KE1503 257 - 257 aa - 257 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4679+/-0.000363; mu= 13.6442+/- 0.022
mean_var=66.5023+/-13.343, 0's: 0 Z-trim(113.8): 16 B-trim: 0 in 0/52
Lambda= 0.157274
statistics sampled from 23297 (23313) to 23297 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.273), width: 16
Scan time: 6.720
The best scores are: opt bits E(85289)
NP_001304711 (OMIM: 604177) 60S ribosomal protein ( 257) 1731 401.5 7.7e-112
NP_001304700 (OMIM: 604177) 60S ribosomal protein ( 257) 1731 401.5 7.7e-112
NP_150644 (OMIM: 604177) 60S ribosomal protein L8 ( 257) 1731 401.5 7.7e-112
NP_000964 (OMIM: 604177) 60S ribosomal protein L8 ( 257) 1731 401.5 7.7e-112
XP_016869212 (OMIM: 604177) PREDICTED: 60S ribosom ( 291) 1380 321.9 8.1e-88
XP_005249218 (OMIM: 611822) PREDICTED: 39S ribosom ( 273) 171 47.5 2.9e-05
NP_057034 (OMIM: 611822) 39S ribosomal protein L2, ( 305) 171 47.6 3.2e-05
NP_001287777 (OMIM: 611822) 39S ribosomal protein ( 225) 134 39.1 0.0083
>>NP_001304711 (OMIM: 604177) 60S ribosomal protein L8 [ (257 aa)
initn: 1731 init1: 1731 opt: 1731 Z-score: 2128.8 bits: 401.5 E(85289): 7.7e-112
Smith-Waterman score: 1731; 99.6% identity (100.0% similar) in 257 aa overlap (1-257:1-257)
10 20 30 40 50 60
pF1KE1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKP
:::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
NP_001 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA
190 200 210 220 230 240
250
pF1KE1 RRTGRLRGTKTVQEKEN
:::::::::::::::::
NP_001 RRTGRLRGTKTVQEKEN
250
>>NP_001304700 (OMIM: 604177) 60S ribosomal protein L8 [ (257 aa)
initn: 1731 init1: 1731 opt: 1731 Z-score: 2128.8 bits: 401.5 E(85289): 7.7e-112
Smith-Waterman score: 1731; 99.6% identity (100.0% similar) in 257 aa overlap (1-257:1-257)
10 20 30 40 50 60
pF1KE1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKP
:::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
NP_001 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA
190 200 210 220 230 240
250
pF1KE1 RRTGRLRGTKTVQEKEN
:::::::::::::::::
NP_001 RRTGRLRGTKTVQEKEN
250
>>NP_150644 (OMIM: 604177) 60S ribosomal protein L8 [Hom (257 aa)
initn: 1731 init1: 1731 opt: 1731 Z-score: 2128.8 bits: 401.5 E(85289): 7.7e-112
Smith-Waterman score: 1731; 99.6% identity (100.0% similar) in 257 aa overlap (1-257:1-257)
10 20 30 40 50 60
pF1KE1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_150 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKP
:::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
NP_150 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_150 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_150 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA
190 200 210 220 230 240
250
pF1KE1 RRTGRLRGTKTVQEKEN
:::::::::::::::::
NP_150 RRTGRLRGTKTVQEKEN
250
>>NP_000964 (OMIM: 604177) 60S ribosomal protein L8 [Hom (257 aa)
initn: 1731 init1: 1731 opt: 1731 Z-score: 2128.8 bits: 401.5 E(85289): 7.7e-112
Smith-Waterman score: 1731; 99.6% identity (100.0% similar) in 257 aa overlap (1-257:1-257)
10 20 30 40 50 60
pF1KE1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKP
:::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
NP_000 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA
190 200 210 220 230 240
250
pF1KE1 RRTGRLRGTKTVQEKEN
:::::::::::::::::
NP_000 RRTGRLRGTKTVQEKEN
250
>>XP_016869212 (OMIM: 604177) PREDICTED: 60S ribosomal p (291 aa)
initn: 1377 init1: 1377 opt: 1380 Z-score: 1697.6 bits: 321.9 E(85289): 8.1e-88
Smith-Waterman score: 1380; 98.1% identity (99.0% similar) in 210 aa overlap (1-210:1-209)
10 20 30 40 50 60
pF1KE1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKP
:::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
XP_016 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA
::::::::::::::::::::::::: : .:
XP_016 KAGRAYHKYKAKRNCWPRVRGVAMN-VSNPEMQGWVLKLQWPHCWVGKSHPQVSLQEGDL
190 200 210 220 230
>>XP_005249218 (OMIM: 611822) PREDICTED: 39S ribosomal p (273 aa)
initn: 122 init1: 56 opt: 171 Z-score: 215.5 bits: 47.5 E(85289): 2.9e-05
Smith-Waterman score: 171; 26.2% identity (53.8% similar) in 210 aa overlap (7-203:51-250)
10 20 30
pF1KE1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAE
: : .: . :.: : : .:: .
XP_005 VLTSVALNANFVSWKSRTKYTITPVKMRKSGGRDHTGRI-RVHGIGGGHKQRYRMIDFLR
30 40 50 60 70
40 50 60 70 80
pF1KE1 ------RHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGI----HTGQ
. : .. : .. .:: :.: .: :. . :. :: . :.. : : :.
XP_005 FRPEETKSGPFEEKVIQVRYDPCRSADIALVAGGSRKRWIIATENMQAGDTILNSNHIGR
80 90 100 110 120 130
90 100 110 120 130 140
pF1KE1 FVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKT
.. ... :.. :.:..: ::.. .: .:: .. ::.:. .... . : .
XP_005 MAVAARE-----GDAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGT--A
140 150 160 170 180 190
150 160 170 180 190 200
pF1KE1 RVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNC---WPRVRGVA
..::: . . . :.:: :.. . . : :::: ... .:: : : : :
XP_005 IIQLPSKRQMQVLETCVATVGRVSNVDHNKRVIGKAGR--NRWLGKRPNSGRWHRKGGWA
200 210 220 230 240 250
210 220 230 240 250
pF1KE1 MNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQEKEN
XP_005 GRKIRPLPPMKSYVKLPSASAQS
260 270
>>NP_057034 (OMIM: 611822) 39S ribosomal protein L2, mit (305 aa)
initn: 122 init1: 56 opt: 171 Z-score: 214.7 bits: 47.6 E(85289): 3.2e-05
Smith-Waterman score: 171; 26.2% identity (53.8% similar) in 210 aa overlap (7-203:83-282)
10 20 30
pF1KE1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAE
: : .: . :.: : : .:: .
NP_057 VLTSVALNANFVSWKSRTKYTITPVKMRKSGGRDHTGRI-RVHGIGGGHKQRYRMIDFLR
60 70 80 90 100 110
40 50 60 70 80
pF1KE1 ------RHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGI----HTGQ
. : .. : .. .:: :.: .: :. . :. :: . :.. : : :.
NP_057 FRPEETKSGPFEEKVIQVRYDPCRSADIALVAGGSRKRWIIATENMQAGDTILNSNHIGR
120 130 140 150 160 170
90 100 110 120 130 140
pF1KE1 FVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKT
.. ... :.. :.:..: ::.. .: .:: .. ::.:. .... . : .
NP_057 MAVAARE-----GDAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGT--A
180 190 200 210 220
150 160 170 180 190 200
pF1KE1 RVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNC---WPRVRGVA
..::: . . . :.:: :.. . . : :::: ... .:: : : : :
NP_057 IIQLPSKRQMQVLETCVATVGRVSNVDHNKRVIGKAGR--NRWLGKRPNSGRWHRKGGWA
230 240 250 260 270 280
210 220 230 240 250
pF1KE1 MNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQEKEN
NP_057 GRKIRPLPPMKSYVKLPSASAQS
290 300
>>NP_001287777 (OMIM: 611822) 39S ribosomal protein L2, (225 aa)
initn: 82 init1: 56 opt: 134 Z-score: 171.4 bits: 39.1 E(85289): 0.0083
Smith-Waterman score: 134; 24.8% identity (52.3% similar) in 149 aa overlap (7-145:83-225)
10 20 30
pF1KE1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAE
: : .: . :.: : : .:: .
NP_001 VLTSVALNANFVSWKSRTKYTITPVKMRKSGGRDHTGRI-RVHGIGGGHKQRYRMIDFLR
60 70 80 90 100 110
40 50 60 70 80
pF1KE1 ------RHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGI----HTGQ
. : .. : .. .:: :.: .: :. . :. :: . :.. : : :.
NP_001 FRPEETKSGPFEEKVIQVRYDPCRSADIALVAGGSRKRWIIATENMQAGDTILNSNHIGR
120 130 140 150 160 170
90 100 110 120 130 140
pF1KE1 FVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKT
.. ... :.. :.:..: ::.. .: .:: .. ::.: . . : ..
NP_001 MAVAARE-----GDAHPLGALPVGTLINNVESEPGRGAQYIRAAGAGNVRSNSRPSIQR
180 190 200 210 220
150 160 170 180 190 200
pF1KE1 RVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNP
257 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:36:31 2016 done: Mon Nov 7 01:36:32 2016
Total Scan time: 6.720 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]