FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1503, 257 aa
  1>>>pF1KE1503 257 - 257 aa - 257 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3087+/-0.000782; mu= 14.5994+/- 0.047
 mean_var=65.2316+/-12.896, 0's: 0 Z-trim(107.5): 8  B-trim: 0 in 0/50
 Lambda= 0.158798
 statistics sampled from 9615 (9621) to 9615 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.296), width:  16
 Scan time:  1.960

The best scores are:                                      opt bits E(32554)
CCDS6433.1 RPL8 gene_id:6132|Hs108|chr8            ( 257) 1731 405.1 2.5e-113


>>CCDS6433.1 RPL8 gene_id:6132|Hs108|chr8                 (257 aa)
 initn: 1731 init1: 1731 opt: 1731  Z-score: 2148.2  bits: 405.1 E(32554): 2.5e-113
Smith-Waterman score: 1731; 99.6% identity (100.0% similar) in 257 aa overlap (1-257:1-257)

               10        20        30        40        50        60
pF1KE1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKP
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
CCDS64 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA
              190       200       210       220       230       240

              250       
pF1KE1 RRTGRLRGTKTVQEKEN
       :::::::::::::::::
CCDS64 RRTGRLRGTKTVQEKEN
              250       




257 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:36:31 2016 done: Mon Nov  7 01:36:31 2016
 Total Scan time:  1.960 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]