Result of FASTA (omim) for
pFN21AE1496
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1496, 108 aa
1>>>pF1KE1496 108 - 108 aa - 108 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0211+/-0.000338; mu= 11.0600+/- 0.021
mean_var=77.1126+/-15.429, 0's: 0 Z-trim(116.6): 81 B-trim: 989 in 1/50
Lambda= 0.146053
statistics sampled from 27792 (27896) to 27792 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.327), width: 16
Scan time: 4.220
The best scores are: opt bits E(85289)
NP_055063 (OMIM: 603814) E3 ubiquitin-protein liga ( 108) 797 176.6 6.8e-45
NP_055060 (OMIM: 603863) RING-box protein 2 isofor ( 113) 392 91.3 3.4e-19
NP_001002246 (OMIM: 614534) anaphase-promoting com ( 84) 279 67.4 4.1e-12
NP_001276344 (OMIM: 614534) anaphase-promoting com ( 84) 279 67.4 4.1e-12
NP_001002248 (OMIM: 614534) anaphase-promoting com ( 84) 279 67.4 4.1e-12
NP_001276345 (OMIM: 614534) anaphase-promoting com ( 84) 279 67.4 4.1e-12
NP_057560 (OMIM: 614534) anaphase-promoting comple ( 84) 279 67.4 4.1e-12
NP_001002245 (OMIM: 614534) anaphase-promoting com ( 84) 279 67.4 4.1e-12
NP_001276343 (OMIM: 614534) anaphase-promoting com ( 84) 279 67.4 4.1e-12
NP_001276346 (OMIM: 614534) anaphase-promoting com ( 84) 279 67.4 4.1e-12
NP_001002249 (OMIM: 614534) anaphase-promoting com ( 84) 279 67.4 4.1e-12
NP_001002247 (OMIM: 614534) anaphase-promoting com ( 84) 279 67.4 4.1e-12
NP_001188299 (OMIM: 603863) RING-box protein 2 iso ( 97) 200 50.8 4.6e-07
NP_899060 (OMIM: 603863) RING-box protein 2 isofor ( 90) 185 47.6 3.9e-06
>>NP_055063 (OMIM: 603814) E3 ubiquitin-protein ligase R (108 aa)
initn: 797 init1: 797 opt: 797 Z-score: 926.9 bits: 176.6 E(85289): 6.8e-45
Smith-Waterman score: 797; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)
10 20 30 40 50 60
pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
10 20 30 40 50 60
70 80 90 100
pF1KE1 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH
::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH
70 80 90 100
>>NP_055060 (OMIM: 603863) RING-box protein 2 isoform 1 (113 aa)
initn: 392 init1: 220 opt: 392 Z-score: 465.5 bits: 91.3 E(85289): 3.4e-19
Smith-Waterman score: 392; 50.5% identity (76.3% similar) in 97 aa overlap (11-107:20-112)
10 20 30 40 50
pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMD
::..:: : : : .:::::::.:.::. :.::::: ..::
NP_055 MADVEDGEETCALASHSGSSGSKSG-GDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMD
10 20 30 40 50
60 70 80 90 100
pF1KE1 LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH
:..:::.. .:.:.:.:: :::.:: :.: :.: . ::: ...: :. :
NP_055 ACLRCQAENK---QEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK
60 70 80 90 100 110
>>NP_001002246 (OMIM: 614534) anaphase-promoting complex (84 aa)
initn: 270 init1: 139 opt: 279 Z-score: 338.5 bits: 67.4 E(85289): 4.1e-12
Smith-Waterman score: 279; 37.5% identity (67.0% similar) in 88 aa overlap (21-105:2-84)
10 20 30 40 50 60
pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
. ..: ::.:: : : .::.::: . : .:.
NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCK---
10 20 30
70 80 90 100
pF1KE1 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQKYGH
. ...: ..:: :.: ::.::: .::...:: ::. .::.:..
NP_001 --VPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE
40 50 60 70 80
>>NP_001276344 (OMIM: 614534) anaphase-promoting complex (84 aa)
initn: 270 init1: 139 opt: 279 Z-score: 338.5 bits: 67.4 E(85289): 4.1e-12
Smith-Waterman score: 279; 37.5% identity (67.0% similar) in 88 aa overlap (21-105:2-84)
10 20 30 40 50 60
pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
. ..: ::.:: : : .::.::: . : .:.
NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCK---
10 20 30
70 80 90 100
pF1KE1 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQKYGH
. ...: ..:: :.: ::.::: .::...:: ::. .::.:..
NP_001 --VPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE
40 50 60 70 80
>>NP_001002248 (OMIM: 614534) anaphase-promoting complex (84 aa)
initn: 270 init1: 139 opt: 279 Z-score: 338.5 bits: 67.4 E(85289): 4.1e-12
Smith-Waterman score: 279; 37.5% identity (67.0% similar) in 88 aa overlap (21-105:2-84)
10 20 30 40 50 60
pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
. ..: ::.:: : : .::.::: . : .:.
NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCK---
10 20 30
70 80 90 100
pF1KE1 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQKYGH
. ...: ..:: :.: ::.::: .::...:: ::. .::.:..
NP_001 --VPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE
40 50 60 70 80
>>NP_001276345 (OMIM: 614534) anaphase-promoting complex (84 aa)
initn: 270 init1: 139 opt: 279 Z-score: 338.5 bits: 67.4 E(85289): 4.1e-12
Smith-Waterman score: 279; 37.5% identity (67.0% similar) in 88 aa overlap (21-105:2-84)
10 20 30 40 50 60
pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
. ..: ::.:: : : .::.::: . : .:.
NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCK---
10 20 30
70 80 90 100
pF1KE1 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQKYGH
. ...: ..:: :.: ::.::: .::...:: ::. .::.:..
NP_001 --VPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE
40 50 60 70 80
>>NP_057560 (OMIM: 614534) anaphase-promoting complex su (84 aa)
initn: 270 init1: 139 opt: 279 Z-score: 338.5 bits: 67.4 E(85289): 4.1e-12
Smith-Waterman score: 279; 37.5% identity (67.0% similar) in 88 aa overlap (21-105:2-84)
10 20 30 40 50 60
pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
. ..: ::.:: : : .::.::: . : .:.
NP_057 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCK---
10 20 30
70 80 90 100
pF1KE1 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQKYGH
. ...: ..:: :.: ::.::: .::...:: ::. .::.:..
NP_057 --VPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE
40 50 60 70 80
>>NP_001002245 (OMIM: 614534) anaphase-promoting complex (84 aa)
initn: 270 init1: 139 opt: 279 Z-score: 338.5 bits: 67.4 E(85289): 4.1e-12
Smith-Waterman score: 279; 37.5% identity (67.0% similar) in 88 aa overlap (21-105:2-84)
10 20 30 40 50 60
pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
. ..: ::.:: : : .::.::: . : .:.
NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCK---
10 20 30
70 80 90 100
pF1KE1 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQKYGH
. ...: ..:: :.: ::.::: .::...:: ::. .::.:..
NP_001 --VPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE
40 50 60 70 80
>>NP_001276343 (OMIM: 614534) anaphase-promoting complex (84 aa)
initn: 270 init1: 139 opt: 279 Z-score: 338.5 bits: 67.4 E(85289): 4.1e-12
Smith-Waterman score: 279; 37.5% identity (67.0% similar) in 88 aa overlap (21-105:2-84)
10 20 30 40 50 60
pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
. ..: ::.:: : : .::.::: . : .:.
NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCK---
10 20 30
70 80 90 100
pF1KE1 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQKYGH
. ...: ..:: :.: ::.::: .::...:: ::. .::.:..
NP_001 --VPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE
40 50 60 70 80
>>NP_001276346 (OMIM: 614534) anaphase-promoting complex (84 aa)
initn: 270 init1: 139 opt: 279 Z-score: 338.5 bits: 67.4 E(85289): 4.1e-12
Smith-Waterman score: 279; 37.5% identity (67.0% similar) in 88 aa overlap (21-105:2-84)
10 20 30 40 50 60
pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
. ..: ::.:: : : .::.::: . : .:.
NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCK---
10 20 30
70 80 90 100
pF1KE1 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQKYGH
. ...: ..:: :.: ::.::: .::...:: ::. .::.:..
NP_001 --VPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE
40 50 60 70 80
108 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 03:40:23 2016 done: Mon Nov 7 03:40:24 2016
Total Scan time: 4.220 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]