FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1495, 241 aa
  1>>>pF1KE1495 241 - 241 aa - 241 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7302+/-0.000649; mu= 17.9854+/- 0.039
 mean_var=66.1617+/-12.980, 0's: 0 Z-trim(110.8): 31  B-trim: 0 in 0/52
 Lambda= 0.157678
 statistics sampled from 11870 (11901) to 11870 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.366), width:  16
 Scan time:  2.120

The best scores are:                                      opt bits E(32554)
CCDS13987.1 PDGFB gene_id:5155|Hs108|chr22         ( 241) 1638 380.7 4.6e-106
CCDS33650.1 PDGFB gene_id:5155|Hs108|chr22         ( 226) 1484 345.7 1.5e-95
CCDS47524.1 PDGFA gene_id:5154|Hs108|chr7          ( 196)  500 121.8 3.4e-28
CCDS34578.1 PDGFA gene_id:5154|Hs108|chr7          ( 211)  500 121.8 3.6e-28


>>CCDS13987.1 PDGFB gene_id:5155|Hs108|chr22              (241 aa)
 initn: 1638 init1: 1638 opt: 1638  Z-score: 2017.6  bits: 380.7 E(32554): 4.6e-106
Smith-Waterman score: 1638; 100.0% identity (100.0% similar) in 241 aa overlap (1-241:1-241)

               10        20        30        40        50        60
pF1KE1 MNRCWALFLSLCCYLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MNRCWALFLSLCCYLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DLNMTRSHSGGELESLARGRRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DLNMTRSHSGGELESLARGRRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 WPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 WPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 ETVAAARPVTRSPGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ETVAAARPVTRSPGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLG
              190       200       210       220       230       240

        
pF1KE1 A
       :
CCDS13 A
        

>>CCDS33650.1 PDGFB gene_id:5155|Hs108|chr22              (226 aa)
 initn: 1484 init1: 1484 opt: 1484  Z-score: 1828.7  bits: 345.7 E(32554): 1.5e-95
Smith-Waterman score: 1484; 100.0% identity (100.0% similar) in 220 aa overlap (22-241:7-226)

               10        20        30        40        50        60
pF1KE1 MNRCWALFLSLCCYLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAEL
                            :::::::::::::::::::::::::::::::::::::::
CCDS33                MFIMGLGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAEL
                              10        20        30        40     

               70        80        90       100       110       120
pF1KE1 DLNMTRSHSGGELESLARGRRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DLNMTRSHSGGELESLARGRRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLV
          50        60        70        80        90       100     

              130       140       150       160       170       180
pF1KE1 WPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 WPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKC
         110       120       130       140       150       160     

              190       200       210       220       230       240
pF1KE1 ETVAAARPVTRSPGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ETVAAARPVTRSPGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLG
         170       180       190       200       210       220     

        
pF1KE1 A
       :
CCDS33 A
        

>>CCDS47524.1 PDGFA gene_id:5154|Hs108|chr7               (196 aa)
 initn: 519 init1: 395 opt: 500  Z-score: 619.7  bits: 121.8 E(32554): 3.4e-28
Smith-Waterman score: 500; 46.4% identity (68.3% similar) in 183 aa overlap (7-184:7-183)

               10        20        30        40        50          
pF1KE1 MNRCWALFLSLCCYLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDP-GEEDGAE
             :.:  : ::  : ::   ::.:. : :.  .:.:. ::::::. :  : ::.  
CCDS47 MRTLACLLLLGCGYLAHVLAEEAEIPREVIERLARSQIHSIRDLQRLLEIDSVGSEDS--
               10        20        30        40        50          

      60        70        80            90       100       110     
pF1KE1 LDLNMTRSHSGGELESLARGR----RSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTN
       :: .. :.:.    . . . :    :   :.  : ::.   ::::: ..:: :  .: :.
CCDS47 LDTSL-RAHGVHATKHVPEKRPLPIRRKRSIEEAVPAV---CKTRTVIYEIPRSQVDPTS
       60         70        80        90          100       110    

         120       130       140       150       160       170     
pF1KE1 ANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDH
       ::::.:::::::.::.::::. .:.:.:..:. : :.: :.: ::::: .:.. : ::.:
CCDS47 ANFLIWPPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEH
          120       130       140       150       160       170    

         180       190       200       210       220       230     
pF1KE1 LACKCETVAAARPVTRSPGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTAL
       : : : :..                                                   
CCDS47 LECACATTSLNPDYREEDTDVR                                      
          180       190                                            

>>CCDS34578.1 PDGFA gene_id:5154|Hs108|chr7               (211 aa)
 initn: 535 init1: 395 opt: 500  Z-score: 619.3  bits: 121.8 E(32554): 3.6e-28
Smith-Waterman score: 500; 46.4% identity (68.3% similar) in 183 aa overlap (7-184:7-183)

               10        20        30        40        50          
pF1KE1 MNRCWALFLSLCCYLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDP-GEEDGAE
             :.:  : ::  : ::   ::.:. : :.  .:.:. ::::::. :  : ::.  
CCDS34 MRTLACLLLLGCGYLAHVLAEEAEIPREVIERLARSQIHSIRDLQRLLEIDSVGSEDS--
               10        20        30        40        50          

      60        70        80            90       100       110     
pF1KE1 LDLNMTRSHSGGELESLARGR----RSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTN
       :: .. :.:.    . . . :    :   :.  : ::.   ::::: ..:: :  .: :.
CCDS34 LDTSL-RAHGVHATKHVPEKRPLPIRRKRSIEEAVPAV---CKTRTVIYEIPRSQVDPTS
       60         70        80        90          100       110    

         120       130       140       150       160       170     
pF1KE1 ANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDH
       ::::.:::::::.::.::::. .:.:.:..:. : :.: :.: ::::: .:.. : ::.:
CCDS34 ANFLIWPPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEH
          120       130       140       150       160       170    

         180       190       200       210       220       230     
pF1KE1 LACKCETVAAARPVTRSPGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTAL
       : : : :..                                                   
CCDS34 LECACATTSLNPDYREEDTGRPRESGKKRKRKRLKPT                       
          180       190       200       210                        




241 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:43:54 2016 done: Mon Nov  7 03:43:55 2016
 Total Scan time:  2.120 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]