FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1486, 903 aa
  1>>>pF1KE1486 903 - 903 aa - 903 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9946+/-0.000908; mu= 4.3849+/- 0.055
 mean_var=166.2813+/-33.134, 0's: 0 Z-trim(111.8): 23  B-trim: 0 in 0/52
 Lambda= 0.099461
 statistics sampled from 12670 (12683) to 12670 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.39), width:  16
 Scan time:  4.420

The best scores are:                                      opt bits E(32554)
CCDS11594.1 AKAP1 gene_id:8165|Hs108|chr17         ( 903) 5969 868.9       0


>>CCDS11594.1 AKAP1 gene_id:8165|Hs108|chr17              (903 aa)
 initn: 5969 init1: 5969 opt: 5969  Z-score: 4635.4  bits: 868.9 E(32554):    0
Smith-Waterman score: 5969; 99.9% identity (99.9% similar) in 903 aa overlap (1-903:1-903)

               10        20        30        40        50        60
pF1KE1 MAIQFRSLFPLALPGMLALLGWWWFFSRKKGHVSSHDEQQVEAGAVQLRADPAIKEPLPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAIQFRSLFPLALPGMLALLGWWWFFSRKKGHVSSHDEQQVEAGAVQLRADPAIKEPLPV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EDVCPKVVSTPPSVTEPPEKELSTVSKLPAEPPALLQTHPPCRRSESSGILPNTTDMRLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EDVCPKVVSTPPSVTEPPEKELSTVSKLPAEPPALLQTHPPCRRSESSGILPNTTDMRLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 PGTRRDDSTKLELALTGGEAKSIPLECPLSSPKGVLFSSKSAEVCKQDSPFSRVPRKVQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PGTRRDDSTKLELALTGGEAKSIPLECPLSSPKGVLFSSKSAEVCKQDSPFSRVPRKVQP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 GYPVVPAEKRSSGERARETGGAEGTGDAVLGEKVLEEALLSREHVLELENSKGPSLASLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GYPVVPAEKRSSGERARETGGAEGTGDAVLGEKVLEEALLSREHVLELENSKGPSLASLE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 GEEDKGKSSSSQVVGPVQEEEYVAEKLPSRFIESAHTELAKDDAAPAPPVADAKAQDRGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GEEDKGKSSSSQVVGPVQEEEYVAEKLPSRFIESAHTELAKDDAAPAPPVADAKAQDRGV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 EGELGNEESLDRNEEGLDRNEEGLDRNEESLDRNEEGLDRNEEIKRAAFQIISQVISEAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EGELGNEESLDRNEEGLDRNEEGLDRNEESLDRNEEGLDRNEEIKRAAFQIISQVISEAT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 EQVLATTVGKVAGRVCQASQLQGQKEESCVPVHQKTVLGPDTAEPATAEAAVAPPDAGLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EQVLATTVGKVAGRVCQASQLQGQKEESCVPVHQKTVLGPDTAEPATAEAAVAPPDAGLP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 LPGLPAEGSPPPKTYVSCLKSLLSSPTKDSKPNISAHHISLASCLALTTPSEELPDRAGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LPGLPAEGSPPPKTYVSCLKSLLSSPTKDSKPNISAHHISLASCLALTTPSEELPDRAGI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 LVEDATCVTCMSDSSQSVPLVASPGHCSDSFSTSGLEDSCTETSSSPRDKAITPPLPEST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LVEDATCVTCMSDSSQSVPLVASPGHCSDSFSTSGLEDSCTETSSSPRDKAITPPLPEST
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE1 VPFSNGVLKGELSDLGAEDGWTMDAEADHSGGSDRNSMDSVDSCCSLKKTESFQNAQAGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VPFSNGVLKGELSDLGAEDGWTMDAEADHSGGSDRNSMDSVDSCCSLKKTESFQNAQAGS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE1 NPKKVDLIIWEIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIYISTLPYTQSVQICHIEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NPKKVDLIIWEIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIYISTLPYTQSVQICHIEGS
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE1 QHHVDKALNLIGKKFKELNLTNIYAPPLPSLALPSLPMTSWLMLPDGITVEVIVVNQVNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QHHVDKALNLIGKKFKELNLTNIYAPPLPSLALPSLPMTSWLMLPDGITVEVIVVNQVNA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE1 GHLFVQQHTHPTFHALRSLDQQMYLCYSQPGIPTLPTPVEITVICAAPGADGAWWRAQVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GHLFVQQHTHPTFHALRSLDQQMYLCYSQPGIPTLPTPVEITVICAAPGADGAWWRAQVV
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE1 ASYEETNEVEIRYVHYGGYKRVKVDVLRQIRSDFVTLPFQGAEVLLDSVMPLSDDDQFSP
       :::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQGAEVLLDSVMPLSDDDQFSP
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE1 EADAAMSEMTGNTALLAQVTSYSPTGLPLIQLWSVVGDEVVLINRSLVERGLAQWVDSYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EADAAMSEMTGNTALLAQVTSYSPTGLPLIQLWSVVGDEVVLINRSLVERGLAQWVDSYY
              850       860       870       880       890       900

          
pF1KE1 TSL
       :::
CCDS11 TSL
          




903 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:43:34 2016 done: Mon Nov  7 15:43:35 2016
 Total Scan time:  4.420 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]