FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1480, 97 aa
  1>>>pF1KE1480 97 - 97 aa - 97 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6579+/-0.000524; mu= 12.9555+/- 0.032
 mean_var=54.6394+/-10.701, 0's: 0 Z-trim(113.4): 11  B-trim: 38 in 1/50
 Lambda= 0.173509
 statistics sampled from 14050 (14056) to 14050 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.432), width:  16
 Scan time:  1.610

The best scores are:                                      opt bits E(32554)
CCDS5387.1 NPY gene_id:4852|Hs108|chr7             (  97)  637 166.1   3e-42
CCDS32662.1 PYY gene_id:5697|Hs108|chr17           (  97)  327 88.5 6.9e-19


>>CCDS5387.1 NPY gene_id:4852|Hs108|chr7                  (97 aa)
 initn: 637 init1: 637 opt: 637  Z-score: 872.0  bits: 166.1 E(32554): 3e-42
Smith-Waterman score: 637; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97)

               10        20        30        40        50        60
pF1KE1 MLGNKRLGLSGLTLALSLLVCLGALAEAYPSKPDNPGEDAPAEDMARYYSALRHYINLIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MLGNKRLGLSGLTLALSLLVCLGALAEAYPSKPDNPGEDAPAEDMARYYSALRHYINLIT
               10        20        30        40        50        60

               70        80        90       
pF1KE1 RQRYGKRSSPETLISDLLMRESTENVPRTRLEDPAMW
       :::::::::::::::::::::::::::::::::::::
CCDS53 RQRYGKRSSPETLISDLLMRESTENVPRTRLEDPAMW
               70        80        90       

>>CCDS32662.1 PYY gene_id:5697|Hs108|chr17                (97 aa)
 initn: 307 init1: 281 opt: 327  Z-score: 452.6  bits: 88.5 E(32554): 6.9e-19
Smith-Waterman score: 327; 54.1% identity (80.0% similar) in 85 aa overlap (13-97:13-97)

               10        20        30        40        50        60
pF1KE1 MLGNKRLGLSGLTLALSLLVCLGALAEAYPSKPDNPGEDAPAEDMARYYSALRHYINLIT
                   :. :.::::::::..::: ::. : :::  :.. :::..::::.::.:
CCDS32 MVFVRRPWPALTTVLLALLVCLGALVDAYPIKPEAPREDASPEELNRYYASLRHYLNLVT
               10        20        30        40        50        60

               70        80        90       
pF1KE1 RQRYGKRSSPETLISDLLMRESTENVPRTRLEDPAMW
       :::::::..:.::.:  .. .. .   :.: : : .:
CCDS32 RQRYGKRDGPDTLLSKTFFPDGEDRPVRSRSEGPDLW
               70        80        90       




97 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:17:45 2016 done: Mon Nov  7 00:17:45 2016
 Total Scan time:  1.610 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]