FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1477, 351 aa
  1>>>pF1KE1477 351 - 351 aa - 351 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.8581+/-0.000388; mu= -5.2800+/- 0.024
 mean_var=407.3288+/-83.338, 0's: 0 Z-trim(124.7): 2  B-trim: 871 in 1/61
 Lambda= 0.063548
 statistics sampled from 46984 (46989) to 46984 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.551), width:  16
 Scan time:  9.650

The best scores are:                                      opt bits E(85289)
NP_001758 (OMIM: 186990) T-cell surface antigen CD ( 351) 2380 231.5 2.2e-60
NP_001315538 (OMIM: 186990) T-cell surface antigen ( 377) 1360 138.0 3.3e-32


>>NP_001758 (OMIM: 186990) T-cell surface antigen CD2 is  (351 aa)
 initn: 2380 init1: 2380 opt: 2380  Z-score: 1205.0  bits: 231.5 E(85289): 2.2e-60
Smith-Waterman score: 2380; 99.7% identity (100.0% similar) in 351 aa overlap (1-351:1-351)

               10        20        30        40        50        60
pF1KE1 MSFPCKFVASFLLIFNVSSKGAVSKEITNALETWGALGQDINLDIPSFQMSDDIDDIKWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSFPCKFVASFLLIFNVSSKGAVSKEITNALETWGALGQDINLDIPSFQMSDDIDDIKWE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 IFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 SAKFKCTAGNKVSKESSVEPVSCPEKGLDIYLIIGICGGGSLLMVFVALLVFYITKRKKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAKFKCTAGNKVSKESSVEPVSCPEKGLDIYLIIGICGGGSLLMVFVALLVFYITKRKKQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 RSRRNDEELETRAHRVATEERGRKPQQIPASTPQNPATSQHPPPPPGHRSQAPSHRPPPP
       :::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::
NP_001 RSRRNDEELETRAHRVATEERGRKPHQIPASTPQNPATSQHPPPPPGHRSQAPSHRPPPP
              250       260       270       280       290       300

              310       320       330       340       350 
pF1KE1 GHRVQHQPQKRPPAPSGTQVHQQKGPPLPRPRVQPKPPHGAAENSLSPSSN
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHRVQHQPQKRPPAPSGTQVHQQKGPPLPRPRVQPKPPHGAAENSLSPSSN
              310       320       330       340       350 

>>NP_001315538 (OMIM: 186990) T-cell surface antigen CD2  (377 aa)
 initn: 2366 init1: 1343 opt: 1360  Z-score: 699.2  bits: 138.0 E(85289): 3.3e-32
Smith-Waterman score: 2318; 92.8% identity (93.1% similar) in 377 aa overlap (1-351:1-377)

               10        20        30        40        50        60
pF1KE1 MSFPCKFVASFLLIFNVSSKGAVSKEITNALETWGALGQDINLDIPSFQMSDDIDDIKWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSFPCKFVASFLLIFNVSSKGAVSKEITNALETWGALGQDINLDIPSFQMSDDIDDIKWE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 IFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSL
              130       140       150       160       170       180

              190       200                                 210    
pF1KE1 SAKFKCTAGNKVSKESSVEPVSCP--------------------------EKGLDIYLII
       ::::::::::::::::::::::::                          ::::::::::
NP_001 SAKFKCTAGNKVSKESSVEPVSCPGGSILGQSNGLSAWTPPSHPTSLPFAEKGLDIYLII
              190       200       210       220       230       240

          220       230       240       250       260       270    
pF1KE1 GICGGGSLLMVFVALLVFYITKRKKQRSRRNDEELETRAHRVATEERGRKPQQIPASTPQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_001 GICGGGSLLMVFVALLVFYITKRKKQRSRRNDEELETRAHRVATEERGRKPHQIPASTPQ
              250       260       270       280       290       300

          280       290       300       310       320       330    
pF1KE1 NPATSQHPPPPPGHRSQAPSHRPPPPGHRVQHQPQKRPPAPSGTQVHQQKGPPLPRPRVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NPATSQHPPPPPGHRSQAPSHRPPPPGHRVQHQPQKRPPAPSGTQVHQQKGPPLPRPRVQ
              310       320       330       340       350       360

          340       350 
pF1KE1 PKPPHGAAENSLSPSSN
       :::::::::::::::::
NP_001 PKPPHGAAENSLSPSSN
              370       




351 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:00:39 2016 done: Mon Nov  7 00:00:40 2016
 Total Scan time:  9.650 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]