FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1475, 164 aa
  1>>>pF1KE1475 164 - 164 aa - 164 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3686+/-0.000724; mu= 12.4982+/- 0.044
 mean_var=73.3224+/-14.237, 0's: 0 Z-trim(109.8): 11  B-trim: 0 in 0/51
 Lambda= 0.149781
 statistics sampled from 11122 (11125) to 11122 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.342), width:  16
 Scan time:  1.350

The best scores are:                                      opt bits E(32554)
CCDS1261.1 CD247 gene_id:919|Hs108|chr1            ( 164) 1097 245.5 1.1e-65
CCDS1260.1 CD247 gene_id:919|Hs108|chr1            ( 163) 1078 241.4 1.8e-64


>>CCDS1261.1 CD247 gene_id:919|Hs108|chr1                 (164 aa)
 initn: 1097 init1: 1097 opt: 1097  Z-score: 1292.9  bits: 245.5 E(32554): 1.1e-65
Smith-Waterman score: 1097; 100.0% identity (100.0% similar) in 164 aa overlap (1-164:1-164)

               10        20        30        40        50        60
pF1KE1 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSAD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 APAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQKDKMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 APAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQKDKMA
               70        80        90       100       110       120

              130       140       150       160    
pF1KE1 EAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR
              130       140       150       160    

>>CCDS1260.1 CD247 gene_id:919|Hs108|chr1                 (163 aa)
 initn: 697 init1: 675 opt: 1078  Z-score: 1270.8  bits: 241.4 E(32554): 1.8e-64
Smith-Waterman score: 1078; 99.4% identity (99.4% similar) in 164 aa overlap (1-164:1-163)

               10        20        30        40        50        60
pF1KE1 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSAD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 APAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQKDKMA
       :::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::
CCDS12 APAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKP-RRKNPQEGLYNELQKDKMA
               70        80        90       100        110         

              130       140       150       160    
pF1KE1 EAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR
     120       130       140       150       160   




164 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:38:29 2016 done: Sun Nov  6 22:38:29 2016
 Total Scan time:  1.350 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]