FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1472, 305 aa
  1>>>pF1KE1472 305 - 305 aa - 305 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1636+/-0.00111; mu= 16.3766+/- 0.066
 mean_var=64.5689+/-13.571, 0's: 0 Z-trim(102.3): 46  B-trim: 486 in 1/45
 Lambda= 0.159611
 statistics sampled from 6865 (6894) to 6865 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.557), E-opt: 0.2 (0.212), width:  16
 Scan time:  1.830

The best scores are:                                      opt bits E(32554)
CCDS43125.1 CD47 gene_id:961|Hs108|chr3            ( 305) 1945 456.9 8.8e-129
CCDS43126.1 CD47 gene_id:961|Hs108|chr3            ( 323) 1931 453.7 8.7e-128


>>CCDS43125.1 CD47 gene_id:961|Hs108|chr3                 (305 aa)
 initn: 1945 init1: 1945 opt: 1945  Z-score: 2425.5  bits: 456.9 E(32554): 8.8e-129
Smith-Waterman score: 1945; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)

               10        20        30        40        50        60
pF1KE1 MWPLVAALLLGSACCGSAQLLFNKTKSVEFTFCNDTVVIPCFVTNMEAQNTTEVYVKWKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MWPLVAALLLGSACCGSAQLLFNKTKSVEFTFCNDTVVIPCFVTNMEAQNTTEVYVKWKF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDKSDAVSHTGNYTCEVTELT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDKSDAVSHTGNYTCEVTELT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 REGETIIELKYRVVSWFSPNENILIVIFPIFAILLFWGQFGIKTLKYRSGGMDEKTIALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 REGETIIELKYRVVSWFSPNENILIVIFPIFAILLFWGQFGIKTLKYRSGGMDEKTIALL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VAGLVITVIVIVGAILFVPGEYSLKNATGLGLIVTSTGILILLHYYVFSTAIGLTSFVIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VAGLVITVIVIVGAILFVPGEYSLKNATGLGLIVTSTGILILLHYYVFSTAIGLTSFVIA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 ILVIQVIAYILAVVGLSLCIAACIPMHGPLLISGLSILALAQLLGLVYMKFVASNQKTIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ILVIQVIAYILAVVGLSLCIAACIPMHGPLLISGLSILALAQLLGLVYMKFVASNQKTIQ
              250       260       270       280       290       300

            
pF1KE1 PPRNN
       :::::
CCDS43 PPRNN
            

>>CCDS43126.1 CD47 gene_id:961|Hs108|chr3                 (323 aa)
 initn: 1931 init1: 1931 opt: 1931  Z-score: 2407.7  bits: 453.7 E(32554): 8.7e-128
Smith-Waterman score: 1931; 100.0% identity (100.0% similar) in 303 aa overlap (1-303:1-303)

               10        20        30        40        50        60
pF1KE1 MWPLVAALLLGSACCGSAQLLFNKTKSVEFTFCNDTVVIPCFVTNMEAQNTTEVYVKWKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MWPLVAALLLGSACCGSAQLLFNKTKSVEFTFCNDTVVIPCFVTNMEAQNTTEVYVKWKF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDKSDAVSHTGNYTCEVTELT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDKSDAVSHTGNYTCEVTELT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 REGETIIELKYRVVSWFSPNENILIVIFPIFAILLFWGQFGIKTLKYRSGGMDEKTIALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 REGETIIELKYRVVSWFSPNENILIVIFPIFAILLFWGQFGIKTLKYRSGGMDEKTIALL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VAGLVITVIVIVGAILFVPGEYSLKNATGLGLIVTSTGILILLHYYVFSTAIGLTSFVIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VAGLVITVIVIVGAILFVPGEYSLKNATGLGLIVTSTGILILLHYYVFSTAIGLTSFVIA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 ILVIQVIAYILAVVGLSLCIAACIPMHGPLLISGLSILALAQLLGLVYMKFVASNQKTIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ILVIQVIAYILAVVGLSLCIAACIPMHGPLLISGLSILALAQLLGLVYMKFVASNQKTIQ
              250       260       270       280       290       300

                              
pF1KE1 PPRNN                  
       :::                    
CCDS43 PPRKAVEEPLNAFKESKGMMNDE
              310       320   




305 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:45:16 2016 done: Sun Nov  6 23:45:17 2016
 Total Scan time:  1.830 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]