FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1464, 186 aa
  1>>>pF1KE1464 186 - 186 aa - 186 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8622+/-0.00034; mu= 10.9720+/- 0.021
 mean_var=86.5622+/-16.836, 0's: 0 Z-trim(115.4): 19  B-trim: 0 in 0/53
 Lambda= 0.137851
 statistics sampled from 25758 (25776) to 25758 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.302), width:  16
 Scan time:  5.800

The best scores are:                                      opt bits E(85289)
NP_057472 (OMIM: 604962) T-cell receptor-associate ( 186) 1242 256.4   2e-68
NP_001304676 (OMIM: 604962) T-cell receptor-associ ( 149)  983 204.8 5.3e-53


>>NP_057472 (OMIM: 604962) T-cell receptor-associated tr  (186 aa)
 initn: 1242 init1: 1242 opt: 1242  Z-score: 1349.5  bits: 256.4 E(85289): 2e-68
Smith-Waterman score: 1242; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186)

               10        20        30        40        50        60
pF1KE1 MSGISGCPFFLWGLLALLGLALVISLIFNISHYVEKQRQDKMYSYSSDHTRVDEYYIEDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MSGISGCPFFLWGLLALLGLALVISLIFNISHYVEKQRQDKMYSYSSDHTRVDEYYIEDT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PIYGNLDDMISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSVKGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 PIYGNLDDMISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSVKGK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RRKPRKQNTHFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLFGLIRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 RRKPRKQNTHFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLFGLIRA
              130       140       150       160       170       180

             
pF1KE1 KREPIN
       ::::::
NP_057 KREPIN
             

>>NP_001304676 (OMIM: 604962) T-cell receptor-associated  (149 aa)
 initn: 983 init1: 983 opt: 983  Z-score: 1072.6  bits: 204.8 E(85289): 5.3e-53
Smith-Waterman score: 983; 100.0% identity (100.0% similar) in 147 aa overlap (40-186:3-149)

      10        20        30        40        50        60         
pF1KE1 FLWGLLALLGLALVISLIFNISHYVEKQRQDKMYSYSSDHTRVDEYYIEDTPIYGNLDDM
                                     ::::::::::::::::::::::::::::::
NP_001                             MSDKMYSYSSDHTRVDEYYIEDTPIYGNLDDM
                                           10        20        30  

      70        80        90       100       110       120         
pF1KE1 ISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSVKGKRRKPRKQNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSVKGKRRKPRKQNT
             40        50        60        70        80        90  

     130       140       150       160       170       180      
pF1KE1 HFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLFGLIRAKREPIN
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLFGLIRAKREPIN
            100       110       120       130       140         




186 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:32:58 2016 done: Mon Nov  7 00:32:59 2016
 Total Scan time:  5.800 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]