FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1463, 150 aa
  1>>>pF1KE1463 150 - 150 aa - 150 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8126+/-0.000639; mu= 14.1778+/- 0.038
 mean_var=55.7673+/-11.217, 0's: 0 Z-trim(110.2): 13  B-trim: 0 in 0/51
 Lambda= 0.171745
 statistics sampled from 11390 (11402) to 11390 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.35), width:  16
 Scan time:  1.760

The best scores are:                                      opt bits E(32554)
CCDS34316.1 LTC4S gene_id:4056|Hs108|chr5          ( 150)  964 246.2 5.7e-66
CCDS3749.1 MGST2 gene_id:4258|Hs108|chr4           ( 147)  408 108.4 1.7e-24
CCDS9337.1 ALOX5AP gene_id:241|Hs108|chr13         ( 161)  255 70.5 4.7e-13
CCDS73558.1 ALOX5AP gene_id:241|Hs108|chr13        ( 218)  255 70.6   6e-13


>>CCDS34316.1 LTC4S gene_id:4056|Hs108|chr5               (150 aa)
 initn: 964 init1: 964 opt: 964  Z-score: 1297.8  bits: 246.2 E(32554): 5.7e-66
Smith-Waterman score: 964; 99.3% identity (100.0% similar) in 150 aa overlap (1-150:1-150)

               10        20        30        40        50        60
pF1KE1 MKDEVALLAAVTLLGVLLQAYFSLQVISARRAFRVSPPLTTGPPEFERVYRAQVNCSEYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MKDEVALLAAVTLLGVLLQAYFSLQVISARRAFRVSPPLTTGPPEFERVYRAQVNCSEYF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PLFLATLWVAGIFFHEGAAALCGLVYLFARLRYFQGYARSAQLRLAPLYASARALWLLVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PLFLATLWVAGIFFHEGAAALCGLVYLFARLRYFQGYARSAQLRLAPLYASARALWLLVA
               70        80        90       100       110       120

              130       140       150
pF1KE1 LAALGLLAHFLPAALRAALLGQLRTLLPWA
       :::::::::::::::::::::.::::::::
CCDS34 LAALGLLAHFLPAALRAALLGRLRTLLPWA
              130       140       150

>>CCDS3749.1 MGST2 gene_id:4258|Hs108|chr4                (147 aa)
 initn: 406 init1: 406 opt: 408  Z-score: 553.4  bits: 108.4 E(32554): 1.7e-24
Smith-Waterman score: 408; 45.1% identity (70.8% similar) in 144 aa overlap (1-144:1-144)

               10        20        30        40        50        60
pF1KE1 MKDEVALLAAVTLLGVLLQAYFSLQVISARRAFRVSPPLTTGPPEFERVYRAQVNCSEYF
       :  .  :::::..:..  :.::.::: .::  ..:.:: .:: ::::::.::: :: :..
CCDS37 MAGNSILLAAVSILSACQQSYFALQVGKARLKYKVTPPAVTGSPEFERVFRAQQNCVEFY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PLFLATLWVAGIFFHEGAAALCGLVYLFARLRYFQGYARSAQLRLAPLYASARALWLLVA
       :.:. :::.:: .:..  :.  ::::...:  :: ::...:. :.. .  :   : ::. 
CCDS37 PIFIITLWMAGWYFNQVFATCLGLVYIYGRHLYFWGYSEAAKKRITGFRLSLGILALLTL
               70        80        90       100       110       120

              130       140       150
pF1KE1 LAALGLLAHFLPAALRAALLGQLRTLLPWA
       :.:::.   ::   :   .  .::      
CCDS37 LGALGIANSFLDEYLDLNIAKKLRRQF   
              130       140          

>>CCDS9337.1 ALOX5AP gene_id:241|Hs108|chr13              (161 aa)
 initn: 253 init1: 240 opt: 255  Z-score: 347.9  bits: 70.5 E(32554): 4.7e-13
Smith-Waterman score: 255; 36.7% identity (64.1% similar) in 128 aa overlap (5-131:9-135)

                   10        20        30        40        50      
pF1KE1     MKDEVALLAAVTLLGVLLQAYFSLQVISARRAFRVSPPLTTGPPEFERVYRAQVNC
               :.::: :::..:. ...:. .:    :.        ::   ::::: :. ::
CCDS93 MDQETVGNVVLLAIVTLISVVQNGFFAHKVEHESRTQNGRSFQRTGTLAFERVYTANQNC
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KE1 SEYFPLFLATLWVAGIFFHEGAAALCGLVYLFARLRYFQGYARSAQLRLAPLYA-SARAL
        . .: :::.:: ::..  .  ::. ::.:::.: .:: ::  . . . .: :  . : .
CCDS93 VDAYPTFLAVLWSAGLLCSQVPAAFAGLMYLFVRQKYFVGYL-GERTQSTPGYIFGKRII
               70        80        90       100        110         

         120       130       140       150       
pF1KE1 WLLVALAALGLLAHFLPAALRAALLGQLRTLLPWA       
        .:  ... :.. ..:                          
CCDS93 LFLFLMSVAGIFNYYLIFFFGSDFENYIKTISTTISPLLLIP
     120       130       140       150       160 

>>CCDS73558.1 ALOX5AP gene_id:241|Hs108|chr13             (218 aa)
 initn: 240 init1: 240 opt: 255  Z-score: 346.0  bits: 70.6 E(32554): 6e-13
Smith-Waterman score: 255; 36.7% identity (64.1% similar) in 128 aa overlap (5-131:66-192)

                                         10        20        30    
pF1KE1                           MKDEVALLAAVTLLGVLLQAYFSLQVISARRAFR
                                     :.::: :::..:. ...:. .:    :.  
CCDS73 HQCWAGCAAGGRAVLSGEPEANMDQETVGNVVLLAIVTLISVVQNGFFAHKVEHESRTQN
          40        50        60        70        80        90     

           40        50        60        70        80        90    
pF1KE1 VSPPLTTGPPEFERVYRAQVNCSEYFPLFLATLWVAGIFFHEGAAALCGLVYLFARLRYF
             ::   ::::: :. :: . .: :::.:: ::..  .  ::. ::.:::.: .::
CCDS73 GRSFQRTGTLAFERVYTANQNCVDAYPTFLAVLWSAGLLCSQVPAAFAGLMYLFVRQKYF
         100       110       120       130       140       150     

          100       110        120       130       140       150   
pF1KE1 QGYARSAQLRLAPLYA-SARALWLLVALAALGLLAHFLPAALRAALLGQLRTLLPWA   
        ::  . . . .: :  . : . .:  ... :.. ..:                      
CCDS73 VGYL-GERTQSTPGYIFGKRIILFLFLMSVAGIFNYYLIFFFGSDFENYIKTISTTISPL
          160       170       180       190       200       210    

CCDS73 LLIP
           




150 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:17:10 2016 done: Mon Nov  7 00:17:11 2016
 Total Scan time:  1.760 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]