FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1461, 492 aa
  1>>>pF1KE1461 492 - 492 aa - 492 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6668+/-0.000785; mu= 8.4184+/- 0.047
 mean_var=144.6469+/-29.601, 0's: 0 Z-trim(114.5): 23  B-trim: 524 in 2/49
 Lambda= 0.106640
 statistics sampled from 15042 (15063) to 15042 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.463), width:  16
 Scan time:  3.570

The best scores are:                                      opt bits E(32554)
CCDS4860.1 FRS3 gene_id:10817|Hs108|chr6           ( 492) 3505 550.5 1.6e-156
CCDS41809.1 FRS2 gene_id:10818|Hs108|chr12         ( 508)  880 146.6 5.9e-35


>>CCDS4860.1 FRS3 gene_id:10817|Hs108|chr6                (492 aa)
 initn: 3505 init1: 3505 opt: 3505  Z-score: 2923.8  bits: 550.5 E(32554): 1.6e-156
Smith-Waterman score: 3505; 100.0% identity (100.0% similar) in 492 aa overlap (1-492:1-492)

               10        20        30        40        50        60
pF1KE1 MGSCCSCLNRDSVPDNHPTKFKVTNVDDEGVELGSGVMELTQSELVLHLHRREAVRWPYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MGSCCSCLNRDSVPDNHPTKFKVTNVDDEGVELGSGVMELTQSELVLHLHRREAVRWPYL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 CLRRYGYDSNLFSFESGRRCQTGQGIFAFKCSRAEEIFNLLQDLMQCNSINVMEEPVIIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 CLRRYGYDSNLFSFESGRRCQTGQGIFAFKCSRAEEIFNLLQDLMQCNSINVMEEPVIIT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RNSHPAELDLPRAPQPPNALGYTVSSFSNGCPGEGPRFSAPRRLSTSSLRHPSLGEESTH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 RNSHPAELDLPRAPQPPNALGYTVSSFSNGCPGEGPRFSAPRRLSTSSLRHPSLGEESTH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 ALIAPDEQSHTYVNTPASEDDHRRGRHCLQPLPEGQAPFLPQARGPDQRDPQVFLQPGQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ALIAPDEQSHTYVNTPASEDDHRRGRHCLQPLPEGQAPFLPQARGPDQRDPQVFLQPGQV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 KFVLGPTPARRHMVKCQGLCPSLHDPPHHNNNNEAPSECPAQPKCTYENVTGGLWRGAGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 KFVLGPTPARRHMVKCQGLCPSLHDPPHHNNNNEAPSECPAQPKCTYENVTGGLWRGAGW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 RLSPEEPGWNGLAHRRAALLHYENLPPLPPVWESQAQQLGGEAGDDGDSRDGLTPSSNGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 RLSPEEPGWNGLAHRRAALLHYENLPPLPPVWESQAQQLGGEAGDDGDSRDGLTPSSNGF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 PDGEEDETPLQKPTSTRAAIRSHGSFPVPLTRRRGSPRVFNFDFRRPGPEPPRQLNYIQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 PDGEEDETPLQKPTSTRAAIRSHGSFPVPLTRRRGSPRVFNFDFRRPGPEPPRQLNYIQV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 ELKGWGGDRPKGPQNPSSPQAPMPTTHPARSSDSYAVIDLKKTVAMSNLQRALPRDDGTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ELKGWGGDRPKGPQNPSSPQAPMPTTHPARSSDSYAVIDLKKTVAMSNLQRALPRDDGTA
              430       440       450       460       470       480

              490  
pF1KE1 RKTRHNSTDLPL
       ::::::::::::
CCDS48 RKTRHNSTDLPL
              490  

>>CCDS41809.1 FRS2 gene_id:10818|Hs108|chr12              (508 aa)
 initn: 1402 init1: 663 opt: 880  Z-score: 741.0  bits: 146.6 E(32554): 5.9e-35
Smith-Waterman score: 1524; 48.6% identity (73.4% similar) in 523 aa overlap (1-492:1-508)

               10        20        30        40        50        60
pF1KE1 MGSCCSCLNRDSVPDNHPTKFKVTNVDDEGVELGSGVMELTQSELVLHLHRREAVRWPYL
       ::::::: ..:.::::: .:::: ::::.: :::::.::::..::.:. ..:..:.: ::
CCDS41 MGSCCSCPDKDTVPDNHRNKFKVINVDDDGNELGSGIMELTDTELILYTRKRDSVKWHYL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 CLRRYGYDSNLFSFESGRRCQTGQGIFAFKCSRAEEIFNLLQDLMQCNSINVMEEPVIIT
       :::::::::::::::::::::::::::::::.::::.::.::..:: :::::.::::.  
CCDS41 CLRRYGYDSNLFSFESGRRCQTGQGIFAFKCARAEELFNMLQEIMQNNSINVVEEPVV-E
               70        80        90       100       110          

              130       140       150            160       170     
pF1KE1 RNSHPAELDLPRAPQPPNALGYTVSSFSNGCP-----GEGPRFSAPRRLSTSSLRHPSLG
       ::.: .::..::.:. :.. :...... :: :     :..    . :. :..: : ::.:
CCDS41 RNNHQTELEVPRTPRTPTTPGFAAQNLPNGYPRYPSFGDASSHPSSRHPSVGSARLPSVG
     120       130       140       150       160       170         

         180       190       200       210              220        
pF1KE1 EESTHALIAPDEQSHTYVNTPASEDDHRRGRHCLQ-PLP------EGQAPFLPQARGPDQ
       ::::: :.. .:: :::::: . ... :..:  .. ::       :...:   .  . ..
CCDS41 EESTHPLLVAEEQVHTYVNTTGVQEE-RKNRTSVHVPLEARVSNAESSTP-KEEPSSIED
     180       190       200        210       220        230       

      230       240       250       260       270                  
pF1KE1 RDPQVFLQPGQVKFVLGPTPARRHMVKCQGLCPSLHDPPHHN--NNNEAPS--------E
       ::::..:.:  :::::::::....... . :    .:    .  ::.:  .        .
CCDS41 RDPQILLEPEGVKFVLGPTPVQKQLMEKEKLEQLGRDQVSGSGANNTEWDTGYDSDERRD
       240       250       260       270       280       290       

      280       290              300        310       320       330
pF1KE1 CPAQPKCTYENVTG-------GLWRGAGWRLSPEEP-GWNGLAHRRAALLHYENLPPLPP
        :.  : .:::..:       :. ::     :  .  . :. :.::.:::.::::: :::
CCDS41 APSVNKLVYENINGLSIPSASGVRRGRLTSTSTSDTQNINNSAQRRTALLNYENLPSLPP
       300       310       320       330       340       350       

              340       350       360       370       380       390
pF1KE1 VWESQAQQLGGEAGDDGDSRDGLTPSSNGFPDGEEDETPLQKPTSTRAAIRSHGSFPVPL
       :::  :..:   . :. :.    ::: ::. .. .   :... ..:. .    ..  .  
CCDS41 VWE--ARKL---SRDEDDNLGPKTPSLNGYHNNLD---PMHNYVNTENVTVPASAHKIEY
       360            370       380          390       400         

               400       410       420       430       440         
pF1KE1 TRRRG-SPRVFNFDFRRPGPEPPRQLNYIQVELKGWGGDRPKGPQNPSSPQAPMPTTHPA
       .:::  .: :::::.:::. :  ::::::::.:.: :.:  . ::.:..: .:.: : :.
CCDS41 SRRRDCTPTVFNFDIRRPSLEH-RQLNYIQVDLEG-GSDSDN-PQTPKTPTTPLPQT-PT
     410       420       430        440         450       460      

     450       460       470       480       490  
pF1KE1 RSSDSYAVIDLKKTVAMSNLQRALPRDDGTARKTRHNSTDLPL
       : .. :::::...:.::::::.::::::::.:::::::::::.
CCDS41 RRTELYAVIDIERTAAMSNLQKALPRDDGTSRKTRHNSTDLPM
         470       480       490       500        




492 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:55:12 2016 done: Mon Nov  7 01:55:13 2016
 Total Scan time:  3.570 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]