Result of FASTA (omim) for
pFN21AE1460
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1460, 333 aa
1>>>pF1KE1460 333 - 333 aa - 333 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5074+/-0.000392; mu= 7.5715+/- 0.025
mean_var=167.4102+/-33.134, 0's: 0 Z-trim(117.3): 17 B-trim: 0 in 0/54
Lambda= 0.099125
statistics sampled from 29187 (29203) to 29187 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.342), width: 16
Scan time: 8.290
The best scores are: opt bits E(85289)
NP_003899 (OMIM: 603908) eukaryotic translation in ( 333) 2199 326.3 5.7e-89
XP_016883607 (OMIM: 603908) PREDICTED: eukaryotic ( 328) 2165 321.4 1.6e-87
NP_001303292 (OMIM: 603908) eukaryotic translation ( 330) 2164 321.3 1.8e-87
NP_001303293 (OMIM: 603908) eukaryotic translation ( 314) 1500 226.3 6.7e-59
>>NP_003899 (OMIM: 603908) eukaryotic translation initia (333 aa)
initn: 2199 init1: 2199 opt: 2199 Z-score: 1718.4 bits: 326.3 E(85289): 5.7e-89
Smith-Waterman score: 2199; 99.7% identity (100.0% similar) in 333 aa overlap (1-333:1-333)
10 20 30 40 50 60
pF1KE1 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADEED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADEED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDVQEPTEPEDDLDIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDVQEPTEPEDDLDIM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LGNKKKKKKNVKFPDEDEILEKDEALEDEDNKKDDGISFSNQTGPAWAGSERDYTYDELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
NP_003 LGNKKKKKKNVKFPDEDEILEKDEALEDEDNKKDDGISFSNQTGPAWAGSERDYTYEELL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL
250 260 270 280 290 300
310 320 330
pF1KE1 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
:::::::::::::::::::::::::::::::::
NP_003 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
310 320 330
>>XP_016883607 (OMIM: 603908) PREDICTED: eukaryotic tran (328 aa)
initn: 2165 init1: 2165 opt: 2165 Z-score: 1692.2 bits: 321.4 E(85289): 1.6e-87
Smith-Waterman score: 2165; 99.7% identity (100.0% similar) in 328 aa overlap (6-333:1-328)
10 20 30 40 50 60
pF1KE1 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADEED
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MIFDPTMSKKKKKKKKPFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADEED
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 TRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDVQEPTEPEDDLDIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDVQEPTEPEDDLDIM
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 LGNKKKKKKNVKFPDEDEILEKDEALEDEDNKKDDGISFSNQTGPAWAGSERDYTYDELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
XP_016 LGNKKKKKKNVKFPDEDEILEKDEALEDEDNKKDDGISFSNQTGPAWAGSERDYTYEELL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE1 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL
240 250 260 270 280 290
310 320 330
pF1KE1 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
:::::::::::::::::::::::::::::::::
XP_016 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
300 310 320
>>NP_001303292 (OMIM: 603908) eukaryotic translation ini (330 aa)
initn: 1614 init1: 1614 opt: 2164 Z-score: 1691.4 bits: 321.3 E(85289): 1.8e-87
Smith-Waterman score: 2164; 98.8% identity (99.1% similar) in 333 aa overlap (1-333:1-330)
10 20 30 40 50 60
pF1KE1 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADEED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADEED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDVQEPTEPEDDLDIM
::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
NP_001 TRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVK---IESDVQEPTEPEDDLDIM
70 80 90 100 110
130 140 150 160 170 180
pF1KE1 LGNKKKKKKNVKFPDEDEILEKDEALEDEDNKKDDGISFSNQTGPAWAGSERDYTYDELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
NP_001 LGNKKKKKKNVKFPDEDEILEKDEALEDEDNKKDDGISFSNQTGPAWAGSERDYTYEELL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE1 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL
240 250 260 270 280 290
310 320 330
pF1KE1 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
:::::::::::::::::::::::::::::::::
NP_001 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
300 310 320 330
>>NP_001303293 (OMIM: 603908) eukaryotic translation ini (314 aa)
initn: 2063 init1: 1500 opt: 1500 Z-score: 1178.5 bits: 226.3 E(85289): 6.7e-59
Smith-Waterman score: 2029; 94.0% identity (94.3% similar) in 333 aa overlap (1-333:1-314)
10 20 30 40 50 60
pF1KE1 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADEED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADEED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDVQEPTEPEDDLDIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDVQEPTEPEDDLDIM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LGNKKKKKKNVKFPDEDEILEKDEALEDEDNKKDDGISFSNQTGPAWAGSERDYTYDELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
NP_001 LGNKKKKKKNVKFPDEDEILEKDEALEDEDNKKDDGISFSNQTGPAWAGSERDYTYEELL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKL------------
190 200 210 220
250 260 270 280 290 300
pF1KE1 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 -------GSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL
230 240 250 260 270 280
310 320 330
pF1KE1 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
:::::::::::::::::::::::::::::::::
NP_001 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
290 300 310
333 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:58:51 2016 done: Mon Nov 7 02:58:52 2016
Total Scan time: 8.290 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]