FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1460, 333 aa
  1>>>pF1KE1460 333 - 333 aa - 333 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6201+/-0.000982; mu= 6.6054+/- 0.059
 mean_var=158.5279+/-31.115, 0's: 0 Z-trim(110.2): 16  B-trim: 13 in 1/49
 Lambda= 0.101864
 statistics sampled from 11443 (11451) to 11443 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.352), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS13231.1 EIF2S2 gene_id:8894|Hs108|chr20        ( 333) 2199 334.8   6e-92


>>CCDS13231.1 EIF2S2 gene_id:8894|Hs108|chr20             (333 aa)
 initn: 2199 init1: 2199 opt: 2199  Z-score: 1764.3  bits: 334.8 E(32554): 6e-92
Smith-Waterman score: 2199; 99.7% identity (100.0% similar) in 333 aa overlap (1-333:1-333)

               10        20        30        40        50        60
pF1KE1 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADEED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 TRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDVQEPTEPEDDLDIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDVQEPTEPEDDLDIM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LGNKKKKKKNVKFPDEDEILEKDEALEDEDNKKDDGISFSNQTGPAWAGSERDYTYDELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS13 LGNKKKKKKNVKFPDEDEILEKDEALEDEDNKKDDGISFSNQTGPAWAGSERDYTYEELL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL
              250       260       270       280       290       300

              310       320       330   
pF1KE1 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
       :::::::::::::::::::::::::::::::::
CCDS13 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
              310       320       330   




333 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:58:50 2016 done: Mon Nov  7 02:58:51 2016
 Total Scan time:  2.280 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]