FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1458, 271 aa
  1>>>pF1KE1458 271 - 271 aa - 271 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9338+/-0.000682; mu= 16.8329+/- 0.041
 mean_var=56.2364+/-11.248, 0's: 0 Z-trim(108.7): 21  B-trim: 0 in 0/49
 Lambda= 0.171027
 statistics sampled from 10391 (10402) to 10391 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.32), width:  16
 Scan time:  2.010

The best scores are:                                      opt bits E(32554)
CCDS14206.1 PRDX4 gene_id:10549|Hs108|chrX         ( 271) 1843 462.4 1.5e-130
CCDS12281.1 PRDX2 gene_id:7001|Hs108|chr19         ( 198)  957 243.7 7.5e-65
CCDS522.1 PRDX1 gene_id:5052|Hs108|chr1            ( 199)  951 242.3 2.1e-64
CCDS7611.1 PRDX3 gene_id:10935|Hs108|chr10         ( 256)  911 232.4 2.4e-61


>>CCDS14206.1 PRDX4 gene_id:10549|Hs108|chrX              (271 aa)
 initn: 1843 init1: 1843 opt: 1843  Z-score: 2457.2  bits: 462.4 E(32554): 1.5e-130
Smith-Waterman score: 1843; 100.0% identity (100.0% similar) in 271 aa overlap (1-271:1-271)

               10        20        30        40        50        60
pF1KE1 MEALPLLAATTPDHGRHRRLLLLPLLLFLLPAGAVQGWETEERPRTREEECHFYAGGQVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MEALPLLAATTPDHGRHRRLLLLPLLLFLLPAGAVQGWETEERPRTREEECHFYAGGQVY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PGEASRVSVADHSLHLSKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PGEASRVSVADHSLHLSKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 TFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 THQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 THQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDK
              190       200       210       220       230       240

              250       260       270 
pF1KE1 HGEVCPAGWKPGSETIIPDPAGKLKYFDKLN
       :::::::::::::::::::::::::::::::
CCDS14 HGEVCPAGWKPGSETIIPDPAGKLKYFDKLN
              250       260       270 

>>CCDS12281.1 PRDX2 gene_id:7001|Hs108|chr19              (198 aa)
 initn: 960 init1: 944 opt: 957  Z-score: 1277.8  bits: 243.7 E(32554): 7.5e-65
Smith-Waterman score: 957; 70.5% identity (90.2% similar) in 193 aa overlap (79-271:6-198)

       50        60        70        80        90       100        
pF1KE1 EECHFYAGGQVYPGEASRVSVADHSLHLSKAKISKPAPYWEGTAVIDGEFKELKLTDYRG
                                     :.:.:::: ...:::.:: :::.::.::.:
CCDS12                          MASGNARIGKPAPDFKATAVVDGAFKEVKLSDYKG
                                        10        20        30     

      110       120       130       140       150       160        
pF1KE1 KYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGG
       ::.:.::::::::::::::::::..: :.::... ::.. ::::::::::::::::..::
CCDS12 KYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGG
          40        50        60        70        80        90     

      170       180       190       200       210       220        
pF1KE1 LGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDET
       :::. ::::.:.:...:.::::   : : . ::::::: ::.:::::.:::::::::::.
CCDS12 LGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEA
         100       110       120       130       140       150     

      230       240       250       260       270 
pF1KE1 LRLVQAFQYTDKHGEVCPAGWKPGSETIIPDPAGKLKYFDKLN
       :::::::::::.:::::::::::::.:: :.   . .::.: :
CCDS12 LRLVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSKEYFSKHN
         160       170       180       190        

>>CCDS522.1 PRDX1 gene_id:5052|Hs108|chr1                 (199 aa)
 initn: 966 init1: 905 opt: 951  Z-score: 1269.8  bits: 242.3 E(32554): 2.1e-64
Smith-Waterman score: 951; 70.3% identity (89.6% similar) in 192 aa overlap (79-269:6-197)

       50        60        70        80        90        100       
pF1KE1 EECHFYAGGQVYPGEASRVSVADHSLHLSKAKISKPAPYWEGTAVI-DGEFKELKLTDYR
                                     :::..::: ...:::. ::.::...:.::.
CCDS52                          MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYK
                                        10        20        30     

       110       120       130       140       150       160       
pF1KE1 GKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQG
       :::.::::::::::::::::::::.:: :::...: .:.. ::::.: ::::.:::..::
CCDS52 GKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQG
          40        50        60        70        80        90     

       170       180       190       200       210       220       
pF1KE1 GLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDE
       ::::. :::.::  . :..::::   : : ..::::::::::::::::.:::::::::::
CCDS52 GLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDE
         100       110       120       130       140       150     

       230       240       250       260       270 
pF1KE1 TLRLVQAFQYTDKHGEVCPAGWKPGSETIIPDPAGKLKYFDKLN
       :::::::::.::::::::::::::::.:: ::   . .::.:  
CCDS52 TLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYFSKQK
         160       170       180       190         

>>CCDS7611.1 PRDX3 gene_id:10935|Hs108|chr10              (256 aa)
 initn: 924 init1: 905 opt: 911  Z-score: 1214.8  bits: 232.4 E(32554): 2.4e-61
Smith-Waterman score: 911; 66.5% identity (90.6% similar) in 191 aa overlap (81-271:65-255)

               60        70        80        90       100       110
pF1KE1 CHFYAGGQVYPGEASRVSVADHSLHLSKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKY
                                     ... :::..::::..::::.:.: :..:::
CCDS76 CGRTSLTNLLCSGSSQAKLFSTSSSCHAPAVTQHAPYFKGTAVVNGEFKDLSLDDFKGKY
           40        50        60        70        80        90    

              120       130       140       150       160       170
pF1KE1 LVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLG
       ::.:::::::::::::::.::.:. .::...: :::: ::::.:.:::::::::..::::
CCDS76 LVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLG
          100       110       120       130       140       150    

              180       190       200       210       220       230
pF1KE1 PIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLR
        . : ::::::.:::.:::: :: :: .:::::::: .:.......:::::::::.::::
CCDS76 HMNIALLSDLTKQISRDYGVLLEGSGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLR
          160       170       180       190       200       210    

              240       250       260       270  
pF1KE1 LVQAFQYTDKHGEVCPAGWKPGSETIIPDPAGKLKYFDKLN 
       ::.::::.. :::::::.: : : :: :.::.. .::.:.: 
CCDS76 LVKAFQYVETHGEVCPANWTPDSPTIKPSPAASKEYFQKVNQ
          220       230       240       250      




271 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:20:02 2016 done: Sun Nov  6 23:20:03 2016
 Total Scan time:  2.010 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]