Result of FASTA (ccds) for
pFN21AE1456
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1456, 170 aa
1>>>pF1KE1456 170 - 170 aa - 170 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3315+/-0.000539; mu= 13.6494+/- 0.033
mean_var=74.8083+/-14.779, 0's: 0 Z-trim(115.0): 29 B-trim: 0 in 0/51
Lambda= 0.148286
statistics sampled from 15540 (15569) to 15540 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.827), E-opt: 0.2 (0.478), width: 16
Scan time: 2.100
The best scores are: opt bits E(32554)
CCDS9835.1 PGF gene_id:5228|Hs108|chr14 ( 170) 1212 267.2 3.4e-72
CCDS73664.1 PGF gene_id:5228|Hs108|chr14 ( 169) 1193 263.2 5.7e-71
CCDS55932.1 PGF gene_id:5228|Hs108|chr14 ( 149) 992 220.1 4.5e-58
CCDS55008.1 VEGFA gene_id:7422|Hs108|chr6 ( 209) 499 114.8 3.3e-26
CCDS47433.1 VEGFA gene_id:7422|Hs108|chr6 ( 389) 499 114.9 5.4e-26
CCDS55009.1 VEGFA gene_id:7422|Hs108|chr6 ( 215) 488 112.4 1.7e-25
CCDS4907.2 VEGFA gene_id:7422|Hs108|chr6 ( 395) 488 112.6 2.8e-25
CCDS55010.1 VEGFA gene_id:7422|Hs108|chr6 ( 232) 479 110.5 7e-25
CCDS34457.1 VEGFA gene_id:7422|Hs108|chr6 ( 412) 479 110.7 1.1e-24
CCDS55011.1 VEGFA gene_id:7422|Hs108|chr6 ( 174) 452 104.6 3e-23
CCDS55013.1 VEGFA gene_id:7422|Hs108|chr6 ( 191) 452 104.7 3.3e-23
CCDS55012.1 VEGFA gene_id:7422|Hs108|chr6 ( 191) 452 104.7 3.3e-23
CCDS69125.1 VEGFA gene_id:7422|Hs108|chr6 ( 163) 450 104.2 3.9e-23
CCDS47435.1 VEGFA gene_id:7422|Hs108|chr6 ( 354) 452 104.9 5.3e-23
CCDS34458.1 VEGFA gene_id:7422|Hs108|chr6 ( 371) 452 104.9 5.5e-23
CCDS47432.1 VEGFA gene_id:7422|Hs108|chr6 ( 371) 452 104.9 5.5e-23
CCDS55014.1 VEGFA gene_id:7422|Hs108|chr6 ( 147) 437 101.4 2.5e-22
CCDS47434.1 VEGFA gene_id:7422|Hs108|chr6 ( 327) 437 101.6 4.6e-22
CCDS55015.1 VEGFA gene_id:7422|Hs108|chr6 ( 137) 410 95.6 1.3e-20
CCDS55007.1 VEGFA gene_id:7422|Hs108|chr6 ( 317) 410 95.8 2.5e-20
CCDS58144.1 VEGFB gene_id:7423|Hs108|chr11 ( 188) 291 70.2 7.6e-13
CCDS8062.1 VEGFB gene_id:7423|Hs108|chr11 ( 207) 278 67.5 5.6e-12
>>CCDS9835.1 PGF gene_id:5228|Hs108|chr14 (170 aa)
initn: 1212 init1: 1212 opt: 1212 Z-score: 1409.6 bits: 267.2 E(32554): 3.4e-72
Smith-Waterman score: 1212; 100.0% identity (100.0% similar) in 170 aa overlap (1-170:1-170)
10 20 30 40 50 60
pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL
70 80 90 100 110 120
130 140 150 160 170
pF1KE1 TFSQHVRCECRPLREKMKPERRRPKGRGKRRREKQRPTDCHLCGDAVPRR
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 TFSQHVRCECRPLREKMKPERRRPKGRGKRRREKQRPTDCHLCGDAVPRR
130 140 150 160 170
>>CCDS73664.1 PGF gene_id:5228|Hs108|chr14 (169 aa)
initn: 1044 init1: 1044 opt: 1193 Z-score: 1387.7 bits: 263.2 E(32554): 5.7e-71
Smith-Waterman score: 1193; 99.4% identity (99.4% similar) in 170 aa overlap (1-170:1-169)
10 20 30 40 50 60
pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
CCDS73 MPVMRLFPCFLQLLAGLALPAVPPQ-WALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL
60 70 80 90 100 110
130 140 150 160 170
pF1KE1 TFSQHVRCECRPLREKMKPERRRPKGRGKRRREKQRPTDCHLCGDAVPRR
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TFSQHVRCECRPLREKMKPERRRPKGRGKRRREKQRPTDCHLCGDAVPRR
120 130 140 150 160
>>CCDS55932.1 PGF gene_id:5228|Hs108|chr14 (149 aa)
initn: 1041 init1: 992 opt: 992 Z-score: 1156.1 bits: 220.1 E(32554): 4.5e-58
Smith-Waterman score: 1003; 87.6% identity (87.6% similar) in 170 aa overlap (1-170:1-149)
10 20 30 40 50 60
pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL
70 80 90 100 110 120
130 140 150 160 170
pF1KE1 TFSQHVRCECRPLREKMKPERRRPKGRGKRRREKQRPTDCHLCGDAVPRR
::::::::::::::::::::: ::::::::
CCDS55 TFSQHVRCECRPLREKMKPER---------------------CGDAVPRR
130 140
>>CCDS55008.1 VEGFA gene_id:7422|Hs108|chr6 (209 aa)
initn: 488 init1: 456 opt: 499 Z-score: 584.0 bits: 114.8 E(32554): 3.3e-26
Smith-Waterman score: 499; 45.6% identity (74.5% similar) in 149 aa overlap (25-170:25-168)
10 20 30 40 50 60
pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD
: .. :.:... ::: :..:. ::::. .: :::
CCDS55 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL
. .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:. . :.
CCDS55 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM
70 80 90 100 110 120
130 140 150 160 170
pF1KE1 TFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHLCGDAVPRR
.: :: .::::: ... . :.. : ::.: ::.:.:.:: :: ::
CCDS55 SFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRP-----CGPCSERRKHLFVQD
130 140 150 160 170
CCDS55 PQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR
180 190 200
>>CCDS47433.1 VEGFA gene_id:7422|Hs108|chr6 (389 aa)
initn: 473 init1: 456 opt: 499 Z-score: 580.1 bits: 114.9 E(32554): 5.4e-26
Smith-Waterman score: 499; 45.6% identity (74.5% similar) in 149 aa overlap (25-170:205-348)
10 20 30 40 50
pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRA
: .. :.:... ::: :..:. ::::.
CCDS47 GRASETMNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHP
180 190 200 210 220 230
60 70 80 90 100 110
pF1KE1 LERLVDVVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDR
.: :::. .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:. .
CCDS47 IETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQG
240 250 260 270 280 290
120 130 140 150 160 170
pF1KE1 PSYVELTFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHLCGDAVPRR
:..: :: .::::: ... . :.. : ::.: ::.:.:.:: :: ::
CCDS47 QHIGEMSFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRP-----CGPCSERRK
300 310 320 330 340
CCDS47 HLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR
350 360 370 380
>>CCDS55009.1 VEGFA gene_id:7422|Hs108|chr6 (215 aa)
initn: 471 init1: 456 opt: 488 Z-score: 571.1 bits: 112.4 E(32554): 1.7e-25
Smith-Waterman score: 488; 44.7% identity (74.7% similar) in 150 aa overlap (25-170:25-174)
10 20 30 40 50 60
pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD
: .. :.:... ::: :..:. ::::. .: :::
CCDS55 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL
. .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:. . :.
CCDS55 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM
70 80 90 100 110 120
130 140 150 160 170
pF1KE1 TFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHL-CGDAVPRR
.: :: .::::: ... . :.. : ::.: ::.:.:.: . . :: ::
CCDS55 SFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRYKSWSVPCGPCSERRKHLFVQ
130 140 150 160 170 180
CCDS55 DPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR
190 200 210
>>CCDS4907.2 VEGFA gene_id:7422|Hs108|chr6 (395 aa)
initn: 456 init1: 456 opt: 488 Z-score: 567.3 bits: 112.6 E(32554): 2.8e-25
Smith-Waterman score: 488; 44.7% identity (74.7% similar) in 150 aa overlap (25-170:205-354)
10 20 30 40 50
pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRA
: .. :.:... ::: :..:. ::::.
CCDS49 GRASETMNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHP
180 190 200 210 220 230
60 70 80 90 100 110
pF1KE1 LERLVDVVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDR
.: :::. .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:. .
CCDS49 IETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQG
240 250 260 270 280 290
120 130 140 150 160 170
pF1KE1 PSYVELTFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHL-CGDAVPRR
:..: :: .::::: ... . :.. : ::.: ::.:.:.: . . :: ::
CCDS49 QHIGEMSFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRYKSWSVPCGPCSERR
300 310 320 330 340 350
CCDS49 KHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR
360 370 380 390
>>CCDS55010.1 VEGFA gene_id:7422|Hs108|chr6 (232 aa)
initn: 493 init1: 456 opt: 479 Z-score: 560.2 bits: 110.5 E(32554): 7e-25
Smith-Waterman score: 479; 46.7% identity (78.5% similar) in 135 aa overlap (25-156:25-159)
10 20 30 40 50 60
pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD
: .. :.:... ::: :..:. ::::. .: :::
CCDS55 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL
. .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:. . :.
CCDS55 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM
70 80 90 100 110 120
130 140 150 160 170
pF1KE1 TFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHLCGDAVPRR
.: :: .::::: ... . :.. : ::.: ::.:.:.:
CCDS55 SFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRYKSWSVYVGARCCLMPWSLPG
130 140 150 160 170 180
CCDS55 PHPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR
190 200 210 220 230
>>CCDS34457.1 VEGFA gene_id:7422|Hs108|chr6 (412 aa)
initn: 478 init1: 456 opt: 479 Z-score: 556.7 bits: 110.7 E(32554): 1.1e-24
Smith-Waterman score: 479; 46.7% identity (78.5% similar) in 135 aa overlap (25-156:205-339)
10 20 30 40 50
pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRA
: .. :.:... ::: :..:. ::::.
CCDS34 GRASETMNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHP
180 190 200 210 220 230
60 70 80 90 100 110
pF1KE1 LERLVDVVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDR
.: :::. .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:. .
CCDS34 IETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQG
240 250 260 270 280 290
120 130 140 150 160 170
pF1KE1 PSYVELTFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHLCGDAVPRR
:..: :: .::::: ... . :.. : ::.: ::.:.:.:
CCDS34 QHIGEMSFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRYKSWSVYVGARCCLM
300 310 320 330 340 350
CCDS34 PWSLPGPHPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR
360 370 380 390 400 410
>>CCDS55011.1 VEGFA gene_id:7422|Hs108|chr6 (174 aa)
initn: 445 init1: 414 opt: 452 Z-score: 530.8 bits: 104.6 E(32554): 3e-23
Smith-Waterman score: 452; 43.7% identity (73.2% similar) in 142 aa overlap (25-163:25-163)
10 20 30 40 50 60
pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD
: .. :.:... ::: :..:. ::::. .: :::
CCDS55 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL
. .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:. . :.
CCDS55 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM
70 80 90 100 110 120
130 140 150 160 170
pF1KE1 TFSQHVRCECRPLREKMKPERRRPKGRGKRRREK---QRPTDCHLCGDAVPRR
.: :: .::::: ... . : : : ..::.. : : :. :
CCDS55 SFLQHNKCECRPKKDRARQE--NPCGPCSERRKHLFVQDPQTCK-CSCKNTDSRCKM
130 140 150 160 170
170 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:50:48 2016 done: Mon Nov 7 02:50:49 2016
Total Scan time: 2.100 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]