Result of FASTA (omim) for
pFN21AE1455
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1455, 100 aa
1>>>pF1KE1455 100 - 100 aa - 100 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4879+/-0.000271; mu= 0.2721+/- 0.017
mean_var=133.6446+/-26.097, 0's: 0 Z-trim(122.6): 14 B-trim: 0 in 0/58
Lambda= 0.110943
statistics sampled from 40934 (40950) to 40934 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.48), width: 16
Scan time: 4.780
The best scores are: opt bits E(85289)
NP_004956 (OMIM: 163920) non-histone chromosomal p ( 100) 625 109.7 8.4e-25
XP_016883827 (OMIM: 163920) PREDICTED: non-histone ( 106) 531 94.6 3e-20
NP_004233 (OMIM: 604502) high mobility group nucle ( 99) 227 45.9 1.2e-05
NP_001188291 (OMIM: 604502) high mobility group nu ( 95) 221 45.0 2.3e-05
NP_001305813 (OMIM: 604502) high mobility group nu ( 124) 221 45.0 2.9e-05
NP_001305815 (OMIM: 604502) high mobility group nu ( 128) 221 45.0 3e-05
NP_001188292 (OMIM: 604502) high mobility group nu ( 130) 221 45.1 3e-05
NP_001305816 (OMIM: 604502) high mobility group nu ( 130) 221 45.1 3e-05
NP_001305814 (OMIM: 604502) high mobility group nu ( 82) 204 42.2 0.00014
XP_006724751 (OMIM: 300385) PREDICTED: high mobili ( 283) 199 41.7 0.00067
NP_110390 (OMIM: 300385) high mobility group nucle ( 282) 197 41.4 0.00083
NP_005508 (OMIM: 163910) non-histone chromosomal p ( 90) 178 38.1 0.0026
NP_620058 (OMIM: 604502) high mobility group nucle ( 77) 175 37.6 0.0032
>>NP_004956 (OMIM: 163920) non-histone chromosomal prote (100 aa)
initn: 625 init1: 625 opt: 625 Z-score: 566.3 bits: 109.7 E(85289): 8.4e-25
Smith-Waterman score: 625; 100.0% identity (100.0% similar) in 100 aa overlap (1-100:1-100)
10 20 30 40 50 60
pF1KE1 MPKRKVSSAEGAAKEEPKRRSARLSAKPPAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MPKRKVSSAEGAAKEEPKRRSARLSAKPPAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKG
10 20 30 40 50 60
70 80 90 100
pF1KE1 KQAEVANQETKEDLPAENGETKTEESPASDEAGEKEAKSD
::::::::::::::::::::::::::::::::::::::::
NP_004 KQAEVANQETKEDLPAENGETKTEESPASDEAGEKEAKSD
70 80 90 100
>>XP_016883827 (OMIM: 163920) PREDICTED: non-histone chr (106 aa)
initn: 531 init1: 531 opt: 531 Z-score: 484.6 bits: 94.6 E(85289): 3e-20
Smith-Waterman score: 531; 100.0% identity (100.0% similar) in 85 aa overlap (1-85:1-85)
10 20 30 40 50 60
pF1KE1 MPKRKVSSAEGAAKEEPKRRSARLSAKPPAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPKRKVSSAEGAAKEEPKRRSARLSAKPPAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKG
10 20 30 40 50 60
70 80 90 100
pF1KE1 KQAEVANQETKEDLPAENGETKTEESPASDEAGEKEAKSD
:::::::::::::::::::::::::
XP_016 KQAEVANQETKEDLPAENGETKTEEVRSVCVCVCVCVIALTLNSRY
70 80 90 100
>>NP_004233 (OMIM: 604502) high mobility group nucleosom (99 aa)
initn: 219 init1: 116 opt: 227 Z-score: 222.1 bits: 45.9 E(85289): 1.2e-05
Smith-Waterman score: 227; 47.1% identity (65.4% similar) in 104 aa overlap (1-94:1-99)
10 20 30 40 50
pF1KE1 MPKRKVS-SAEG-----AAKEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTK
::::: ..:: ..:.:: :::::::::: : : : ::.:..:: :. .:
NP_004 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAK-----KEPGAK
10 20 30 40 50
60 70 80 90 100
pF1KE1 GKRGAKGKQAEVANQETKEDLPAENGETKTEESPAS---DEAGEKEAKSD
.::::::. : . . :.::::::.::. . :. ::
NP_004 ISRGAKGKKEEKQEAGKEGTAPSENGETKAEEAQKTESVDNEGE
60 70 80 90
>>NP_001188291 (OMIM: 604502) high mobility group nucleo (95 aa)
initn: 123 init1: 123 opt: 221 Z-score: 217.2 bits: 45.0 E(85289): 2.3e-05
Smith-Waterman score: 221; 50.0% identity (67.4% similar) in 92 aa overlap (1-85:1-87)
10 20 30 40 50
pF1KE1 MPKRKVS-SAEG-----AAKEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTK
::::: ..:: ..:.:: :::::::::: : : : ::.:..:: :. .:
NP_001 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAK-----KEPGAK
10 20 30 40 50
60 70 80 90 100
pF1KE1 GKRGAKGKQAEVANQETKEDLPAENGETKTEESPASDEAGEKEAKSD
.::::::. : . . :.::::::.::
NP_001 ISRGAKGKKEEKQEAGKEGTAPSENGETKAEEVLSINTSH
60 70 80 90
>>NP_001305813 (OMIM: 604502) high mobility group nucleo (124 aa)
initn: 145 init1: 123 opt: 221 Z-score: 215.4 bits: 45.0 E(85289): 2.9e-05
Smith-Waterman score: 221; 50.0% identity (67.4% similar) in 92 aa overlap (1-85:1-87)
10 20 30 40 50
pF1KE1 MPKRKVS-SAEG-----AAKEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTK
::::: ..:: ..:.:: :::::::::: : : : ::.:..:: :. .:
NP_001 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAK-----KEPGAK
10 20 30 40 50
60 70 80 90 100
pF1KE1 GKRGAKGKQAEVANQETKEDLPAENGETKTEESPASDEAGEKEAKSD
.::::::. : . . :.::::::.::
NP_001 ISRGAKGKKEEKQEAGKEGTAPSENGETKAEEIHISRSTVNVSTSRGTPPSTLSVKGQIE
60 70 80 90 100 110
NP_001 TVRVKGTEN
120
>>NP_001305815 (OMIM: 604502) high mobility group nucleo (128 aa)
initn: 123 init1: 123 opt: 221 Z-score: 215.2 bits: 45.0 E(85289): 3e-05
Smith-Waterman score: 221; 50.0% identity (67.4% similar) in 92 aa overlap (1-85:1-87)
10 20 30 40 50
pF1KE1 MPKRKVS-SAEG-----AAKEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTK
::::: ..:: ..:.:: :::::::::: : : : ::.:..:: :. .:
NP_001 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAK-----KEPGAK
10 20 30 40 50
60 70 80 90 100
pF1KE1 GKRGAKGKQAEVANQETKEDLPAENGETKTEESPASDEAGEKEAKSD
.::::::. : . . :.::::::.::
NP_001 ISRGAKGKKEEKQEAGKEGTAPSENGETKAEEIHISRSTVNVSTSRGTPPSTLSVKGQIE
60 70 80 90 100 110
NP_001 TAQKTESVDNEGE
120
>>NP_001188292 (OMIM: 604502) high mobility group nucleo (130 aa)
initn: 145 init1: 123 opt: 221 Z-score: 215.1 bits: 45.1 E(85289): 3e-05
Smith-Waterman score: 221; 50.0% identity (67.4% similar) in 92 aa overlap (1-85:1-87)
10 20 30 40 50
pF1KE1 MPKRKVS-SAEG-----AAKEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTK
::::: ..:: ..:.:: :::::::::: : : : ::.:..:: :. .:
NP_001 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAK-----KEPGAK
10 20 30 40 50
60 70 80 90 100
pF1KE1 GKRGAKGKQAEVANQETKEDLPAENGETKTEESPASDEAGEKEAKSD
.::::::. : . . :.::::::.::
NP_001 ISRGAKGKKEEKQEAGKEGTAPSENGETKAEEIHISRSTVNVSTSRGTPPSTLSVKGQIE
60 70 80 90 100 110
NP_001 TVRAQKTESVDNEGE
120 130
>>NP_001305816 (OMIM: 604502) high mobility group nucleo (130 aa)
initn: 123 init1: 123 opt: 221 Z-score: 215.1 bits: 45.1 E(85289): 3e-05
Smith-Waterman score: 221; 50.0% identity (67.4% similar) in 92 aa overlap (1-85:1-87)
10 20 30 40 50
pF1KE1 MPKRKVS-SAEG-----AAKEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTK
::::: ..:: ..:.:: :::::::::: : : : ::.:..:: :. .:
NP_001 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAK-----KEPGAK
10 20 30 40 50
60 70 80 90 100
pF1KE1 GKRGAKGKQAEVANQETKEDLPAENGETKTEESPASDEAGEKEAKSD
.::::::. : . . :.::::::.::
NP_001 ISRGAKGKKEEKQEAGKEGTAPSENGETKAEEIHISRSTVNVSTSRGTPPSTLSVKGQIE
60 70 80 90 100 110
NP_001 TVRVKGTVENSACLQ
120 130
>>NP_001305814 (OMIM: 604502) high mobility group nucleo (82 aa)
initn: 219 init1: 145 opt: 204 Z-score: 203.4 bits: 42.2 E(85289): 0.00014
Smith-Waterman score: 204; 48.2% identity (67.1% similar) in 85 aa overlap (14-94:3-82)
10 20 30 40 50
pF1KE1 MPKRKVSSAEGAAKEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTKGKRGAK
:..: :::::::::: : : : ::.:..:: :. .: .::::
NP_001 MPKRKPTRRSARLSAKPAPPKPEPKPRKTSAK-----KEPGAKISRGAK
10 20 30 40
60 70 80 90 100
pF1KE1 GKQAEVANQETKEDLPAENGETKTEESPAS---DEAGEKEAKSD
::. : . . :.::::::.::. . :. ::
NP_001 GKKEEKQEAGKEGTAPSENGETKAEEAQKTESVDNEGE
50 60 70 80
>>XP_006724751 (OMIM: 300385) PREDICTED: high mobility g (283 aa)
initn: 194 init1: 87 opt: 199 Z-score: 191.1 bits: 41.7 E(85289): 0.00067
Smith-Waterman score: 199; 40.4% identity (74.7% similar) in 99 aa overlap (1-91:1-96)
10 20 30 40 50
pF1KE1 MPKRKVSSAEGAAKEEPKRRSARLSAKP--PAKVEAKPKKAAA----KDKSS--DKKVQT
::::: ....: ..:::::::::::. :. :.:::.... : ::. .....:
XP_006 MPKRK-AAGQGDMRQEPKRRSARLSAQMLVPVTPEVKPKRTSSSRKMKTKSDMMEENIDT
10 20 30 40 50
60 70 80 90 100
pF1KE1 KGKRGAKGKQAEVANQETKEDLPAENGETKTEESPASDEAGEKEAKSD
... :. :: :.... .:. :.:::.: :.:::..
XP_006 SAQAVAETKQEAVVEEDYNEN--AKNGEAKITEAPASEKEIVEVKEENIEDATEKGGEKK
60 70 80 90 100 110
XP_006 EAVAAEVKNEEEDQKEDEEDQNEEKGEAGKEDKDEKGEEDGKEDKNGNEKGEDAKEKEDG
120 130 140 150 160 170
100 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 03:09:59 2016 done: Mon Nov 7 03:09:59 2016
Total Scan time: 4.780 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]