FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1447, 292 aa
  1>>>pF1KE1447 292 - 292 aa - 292 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3779+/-0.000853; mu= 14.8813+/- 0.051
 mean_var=64.0365+/-12.613, 0's: 0 Z-trim(106.0): 14  B-trim: 0 in 0/49
 Lambda= 0.160273
 statistics sampled from 8755 (8758) to 8755 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.269), width:  16
 Scan time:  2.380

The best scores are:                                      opt bits E(32554)
CCDS2181.1 HNMT gene_id:3176|Hs108|chr2            ( 292) 1945 458.3 2.9e-129
CCDS33296.1 HNMT gene_id:3176|Hs108|chr2           ( 126)  419 105.3 2.4e-23
CCDS33297.1 HNMT gene_id:3176|Hs108|chr2           (  51)  316 81.3 1.6e-16


>>CCDS2181.1 HNMT gene_id:3176|Hs108|chr2                 (292 aa)
 initn: 1945 init1: 1945 opt: 1945  Z-score: 2434.0  bits: 458.3 E(32554): 2.9e-129
Smith-Waterman score: 1945; 99.7% identity (100.0% similar) in 292 aa overlap (1-292:1-292)

               10        20        30        40        50        60
pF1KE1 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 GGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 SEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 KLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYDLLSTMDISDCFIDGDENGDLL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::
CCDS21 KLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYDLLSTMDISDCFIDGNENGDLL
              190       200       210       220       230       240

              250       260       270       280       290  
pF1KE1 WDFLTETCNFNATAPPDLRAELGKDLQEPEFSAKKEGKVLFNNTLSFIVIEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 WDFLTETCNFNATAPPDLRAELGKDLQEPEFSAKKEGKVLFNNTLSFIVIEA
              250       260       270       280       290  

>>CCDS33296.1 HNMT gene_id:3176|Hs108|chr2                (126 aa)
 initn: 419 init1: 419 opt: 419  Z-score: 532.7  bits: 105.3 E(32554): 2.4e-23
Smith-Waterman score: 419; 100.0% identity (100.0% similar) in 63 aa overlap (1-63:1-63)

               10        20        30        40        50        60
pF1KE1 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS
       :::                                                         
CCDS33 GGADCLIRGSSRVLKRNSCFILCSTRQKDKPGMRIHDERSSELPFGAARLESKSAFPSFL
               70        80        90       100       110       120

>>CCDS33297.1 HNMT gene_id:3176|Hs108|chr2                (51 aa)
 initn: 316 init1: 316 opt: 316  Z-score: 410.1  bits: 81.3 E(32554): 1.6e-16
Smith-Waterman score: 316; 100.0% identity (100.0% similar) in 46 aa overlap (1-46:1-46)

               10        20        30        40        50        60
pF1KE1 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG
       ::::::::::::::::::::::::::::::::::::::::::::::              
CCDS33 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRYQNCC         
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE1 GGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS




292 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:43:24 2016 done: Mon Nov  7 00:43:24 2016
 Total Scan time:  2.380 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]