Result of FASTA (omim) for
pFN21AE1443
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1443, 466 aa
1>>>pF1KE1443 466 - 466 aa - 466 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6877+/-0.000294; mu= 17.0688+/- 0.019
mean_var=92.9206+/-18.121, 0's: 0 Z-trim(119.2): 18 B-trim: 76 in 1/56
Lambda= 0.133051
statistics sampled from 32919 (32938) to 32919 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.386), width: 16
Scan time: 9.840
The best scores are: opt bits E(85289)
NP_683759 (OMIM: 615732) probable 28S rRNA (cytosi ( 466) 3121 609.0 8.5e-174
NP_001161819 (OMIM: 615732) probable 28S rRNA (cyt ( 470) 2905 567.6 2.6e-161
NP_060514 (OMIM: 615732) probable 28S rRNA (cytosi ( 429) 2863 559.5 6.5e-159
NP_001161820 (OMIM: 615732) probable 28S rRNA (cyt ( 391) 2189 430.1 5.3e-120
XP_005277661 (OMIM: 615732) PREDICTED: probable 28 ( 381) 1666 329.7 8.7e-90
NP_001028886 (OMIM: 164031) probable 28S rRNA (cyt ( 808) 380 83.1 3.1e-15
NP_006161 (OMIM: 164031) probable 28S rRNA (cytosi ( 808) 380 83.1 3.1e-15
XP_005253748 (OMIM: 164031) PREDICTED: probable 28 ( 812) 380 83.1 3.1e-15
NP_001245237 (OMIM: 164031) probable 28S rRNA (cyt ( 812) 380 83.1 3.1e-15
NP_001245238 (OMIM: 164031) probable 28S rRNA (cyt ( 845) 380 83.1 3.2e-15
NP_001245239 (OMIM: 164031) probable 28S rRNA (cyt ( 628) 375 82.0 5e-15
NP_001243056 (OMIM: 615394) 5-methylcytosine rRNA ( 335) 178 44.0 0.00076
NP_001243057 (OMIM: 615394) 5-methylcytosine rRNA ( 335) 178 44.0 0.00076
NP_950245 (OMIM: 615394) 5-methylcytosine rRNA met ( 384) 178 44.0 0.00084
NP_001180384 (OMIM: 610916,611091) tRNA (cytosine( ( 732) 170 42.7 0.004
NP_060225 (OMIM: 610916,611091) tRNA (cytosine(34) ( 767) 170 42.8 0.0041
>>NP_683759 (OMIM: 615732) probable 28S rRNA (cytosine-C (466 aa)
initn: 3121 init1: 3121 opt: 3121 Z-score: 3241.2 bits: 609.0 E(85289): 8.5e-174
Smith-Waterman score: 3121; 100.0% identity (100.0% similar) in 466 aa overlap (1-466:1-466)
10 20 30 40 50 60
pF1KE1 MGLYAAAAGVLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_683 MGLYAAAAGVLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 RAEKKLRPHLAKVLVYELLLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_683 RAEKKLRPHLAKVLVYELLLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNED
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_683 LLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_683 LDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 TSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_683 TSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_683 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_683 LCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVA
370 380 390 400 410 420
430 440 450 460
pF1KE1 VIERVEVPSSASQAKASAPERTPSPAPKRKKRQQRAAAGACTPPCT
::::::::::::::::::::::::::::::::::::::::::::::
NP_683 VIERVEVPSSASQAKASAPERTPSPAPKRKKRQQRAAAGACTPPCT
430 440 450 460
>>NP_001161819 (OMIM: 615732) probable 28S rRNA (cytosin (470 aa)
initn: 2929 init1: 2905 opt: 2905 Z-score: 3017.0 bits: 567.6 E(85289): 2.6e-161
Smith-Waterman score: 2905; 95.4% identity (97.8% similar) in 456 aa overlap (1-456:1-456)
10 20 30 40 50 60
pF1KE1 MGLYAAAAGVLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGLYAAAAGVLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 RAEKKLRPHLAKVLVYELLLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RAEKKLRPHLAKVLVYELLLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNED
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 TSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVA
370 380 390 400 410 420
430 440 450 460
pF1KE1 VIERVEVPSSASQAKASAPERTPSPAPKRKKRQQRAAAGACTPPCT
::::::::: ..:. .. . ::: :.. ..:.
NP_001 VIERVEVPSLTGQSISTRTHTQPSPKEKEETAKSRSRCLHTALHIAEAPG
430 440 450 460 470
>>NP_060514 (OMIM: 615732) probable 28S rRNA (cytosine-C (429 aa)
initn: 2863 init1: 2863 opt: 2863 Z-score: 2974.0 bits: 559.5 E(85289): 6.5e-159
Smith-Waterman score: 2863; 100.0% identity (100.0% similar) in 428 aa overlap (1-428:1-428)
10 20 30 40 50 60
pF1KE1 MGLYAAAAGVLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MGLYAAAAGVLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 RAEKKLRPHLAKVLVYELLLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 RAEKKLRPHLAKVLVYELLLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNED
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 TSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVA
370 380 390 400 410 420
430 440 450 460
pF1KE1 VIERVEVPSSASQAKASAPERTPSPAPKRKKRQQRAAAGACTPPCT
::::::::
NP_060 VIERVEVPR
>>NP_001161820 (OMIM: 615732) probable 28S rRNA (cytosin (391 aa)
initn: 2175 init1: 2175 opt: 2189 Z-score: 2275.4 bits: 430.1 E(85289): 5.3e-120
Smith-Waterman score: 2527; 91.1% identity (91.1% similar) in 428 aa overlap (1-428:1-390)
10 20 30 40 50 60
pF1KE1 MGLYAAAAGVLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGLYAAAAGVLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 RAEKKLRPHLAKVLVYELLLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNED
::::::::::::: :::::::::
NP_001 RAEKKLRPHLAKV--------------------------------------HRGVSRNED
70 80
130 140 150 160 170 180
pF1KE1 LLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFL
90 100 110 120 130 140
190 200 210 220 230 240
pF1KE1 LDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNK
150 160 170 180 190 200
250 260 270 280 290 300
pF1KE1 TSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH
210 220 230 240 250 260
310 320 330 340 350 360
pF1KE1 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCS
270 280 290 300 310 320
370 380 390 400 410 420
pF1KE1 LCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVA
330 340 350 360 370 380
430 440 450 460
pF1KE1 VIERVEVPSSASQAKASAPERTPSPAPKRKKRQQRAAAGACTPPCT
::::::::
NP_001 VIERVEVPR
390
>>XP_005277661 (OMIM: 615732) PREDICTED: probable 28S rR (381 aa)
initn: 1690 init1: 1666 opt: 1666 Z-score: 1732.9 bits: 329.7 E(85289): 8.7e-90
Smith-Waterman score: 1666; 99.2% identity (100.0% similar) in 254 aa overlap (1-254:1-254)
10 20 30 40 50 60
pF1KE1 MGLYAAAAGVLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGLYAAAAGVLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 RAEKKLRPHLAKVLVYELLLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RAEKKLRPHLAKVLVYELLLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNED
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 TSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH
::::::::::::..
XP_005 TSHLAALLKNQGSLPLTWMPSGWHPWPRCWPGLASLAVNWLRRTSWRSPPRIHATMRSTT
250 260 270 280 290 300
>>NP_001028886 (OMIM: 164031) probable 28S rRNA (cytosin (808 aa)
initn: 276 init1: 232 opt: 380 Z-score: 394.4 bits: 83.1 E(85289): 3.1e-15
Smith-Waterman score: 395; 32.2% identity (54.5% similar) in 354 aa overlap (131-460:299-625)
110 120 130 140 150
pF1KE1 RLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFV--RVNTLKTCSDDVVDYFKRQG
:...:: : :.::::: :... . .:
NP_001 DLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRG
270 280 290 300 310 320
160 170 180 190 200 210
pF1KE1 FSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLP
. :: : :: :.:. ... . : : ::: .:: .: ::
NP_001 VN-------LDPL----GKWSKTG-----LVVYDSSVPIGATPEYLAGHYMLQGASSMLP
330 340 350 360 370
220 230 240 250 260 270
pF1KE1 AMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC
.: : : ...: : :::.:::..: :.:: : :.: : .:.:: :.. : : ::.
NP_001 VMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTN
380 390 400 410 420 430
280 290 300 310 320 330
pF1KE1 CELAEED---FLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVR-LHAL
... : : : . : .::: :::.:. :. .:.. : . . .
NP_001 TIISHYDGRQFPKVVGGFDR------VLLDAPCSGTGVISK---DPAVKTNKDEKDILRC
440 450 460 470 480
340 350 360 370 380
pF1KE1 AGFQQRALCHAL-----TFPSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA
: .:.. : :. : . ::: :::. :::: :: ::.. ::.:.
NP_001 AHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKR--NVRLVPTGLD
490 500 510 520 530 540
390 400 410 420 430 440
pF1KE1 WPHRGLSTF------PGAEHCLRASPETTLSSGFFVAVIERVE--VPSSASQAKASA-PE
. ..:.. : :. . : :.: .:::.: ... .:.: . . .: :
NP_001 FGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSETATPT
550 560 570 580 590 600
450 460
pF1KE1 RT--PSPAPKRKKRQQRA--AAGACTPPCT
. :. :: .. .: : : ::
NP_001 NVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTVP
610 620 630 640 650 660
>>NP_006161 (OMIM: 164031) probable 28S rRNA (cytosine(4 (808 aa)
initn: 276 init1: 232 opt: 380 Z-score: 394.4 bits: 83.1 E(85289): 3.1e-15
Smith-Waterman score: 395; 32.2% identity (54.5% similar) in 354 aa overlap (131-460:299-625)
110 120 130 140 150
pF1KE1 RLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFV--RVNTLKTCSDDVVDYFKRQG
:...:: : :.::::: :... . .:
NP_006 DLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRG
270 280 290 300 310 320
160 170 180 190 200 210
pF1KE1 FSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLP
. :: : :: :.:. ... . : : ::: .:: .: ::
NP_006 VN-------LDPL----GKWSKTG-----LVVYDSSVPIGATPEYLAGHYMLQGASSMLP
330 340 350 360 370
220 230 240 250 260 270
pF1KE1 AMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC
.: : : ...: : :::.:::..: :.:: : :.: : .:.:: :.. : : ::.
NP_006 VMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTN
380 390 400 410 420 430
280 290 300 310 320 330
pF1KE1 CELAEED---FLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVR-LHAL
... : : : . : .::: :::.:. :. .:.. : . . .
NP_006 TIISHYDGRQFPKVVGGFDR------VLLDAPCSGTGVISK---DPAVKTNKDEKDILRC
440 450 460 470 480
340 350 360 370 380
pF1KE1 AGFQQRALCHAL-----TFPSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA
: .:.. : :. : . ::: :::. :::: :: ::.. ::.:.
NP_006 AHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKR--NVRLVPTGLD
490 500 510 520 530 540
390 400 410 420 430 440
pF1KE1 WPHRGLSTF------PGAEHCLRASPETTLSSGFFVAVIERVE--VPSSASQAKASA-PE
. ..:.. : :. . : :.: .:::.: ... .:.: . . .: :
NP_006 FGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSETATPT
550 560 570 580 590 600
450 460
pF1KE1 RT--PSPAPKRKKRQQRA--AAGACTPPCT
. :. :: .. .: : : ::
NP_006 NVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTVP
610 620 630 640 650 660
>>XP_005253748 (OMIM: 164031) PREDICTED: probable 28S rR (812 aa)
initn: 276 init1: 232 opt: 380 Z-score: 394.4 bits: 83.1 E(85289): 3.1e-15
Smith-Waterman score: 395; 32.2% identity (54.5% similar) in 354 aa overlap (131-460:303-629)
110 120 130 140 150
pF1KE1 RLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFV--RVNTLKTCSDDVVDYFKRQG
:...:: : :.::::: :... . .:
XP_005 DLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRG
280 290 300 310 320 330
160 170 180 190 200 210
pF1KE1 FSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLP
. :: : :: :.:. ... . : : ::: .:: .: ::
XP_005 VN-------LDPL----GKWSKTG-----LVVYDSSVPIGATPEYLAGHYMLQGASSMLP
340 350 360 370
220 230 240 250 260 270
pF1KE1 AMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC
.: : : ...: : :::.:::..: :.:: : :.: : .:.:: :.. : : ::.
XP_005 VMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTN
380 390 400 410 420 430
280 290 300 310 320 330
pF1KE1 CELAEED---FLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVR-LHAL
... : : : . : .::: :::.:. :. .:.. : . . .
XP_005 TIISHYDGRQFPKVVGGFDR------VLLDAPCSGTGVISK---DPAVKTNKDEKDILRC
440 450 460 470 480
340 350 360 370 380
pF1KE1 AGFQQRALCHAL-----TFPSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA
: .:.. : :. : . ::: :::. :::: :: ::.. ::.:.
XP_005 AHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKR--NVRLVPTGLD
490 500 510 520 530 540
390 400 410 420 430 440
pF1KE1 WPHRGLSTF------PGAEHCLRASPETTLSSGFFVAVIERVE--VPSSASQAKASA-PE
. ..:.. : :. . : :.: .:::.: ... .:.: . . .: :
XP_005 FGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSETATPT
550 560 570 580 590 600
450 460
pF1KE1 RT--PSPAPKRKKRQQRA--AAGACTPPCT
. :. :: .. .: : : ::
XP_005 NVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTVP
610 620 630 640 650 660
>>NP_001245237 (OMIM: 164031) probable 28S rRNA (cytosin (812 aa)
initn: 276 init1: 232 opt: 380 Z-score: 394.4 bits: 83.1 E(85289): 3.1e-15
Smith-Waterman score: 395; 32.2% identity (54.5% similar) in 354 aa overlap (131-460:303-629)
110 120 130 140 150
pF1KE1 RLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFV--RVNTLKTCSDDVVDYFKRQG
:...:: : :.::::: :... . .:
NP_001 DLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRG
280 290 300 310 320 330
160 170 180 190 200 210
pF1KE1 FSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLP
. :: : :: :.:. ... . : : ::: .:: .: ::
NP_001 VN-------LDPL----GKWSKTG-----LVVYDSSVPIGATPEYLAGHYMLQGASSMLP
340 350 360 370
220 230 240 250 260 270
pF1KE1 AMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC
.: : : ...: : :::.:::..: :.:: : :.: : .:.:: :.. : : ::.
NP_001 VMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTN
380 390 400 410 420 430
280 290 300 310 320 330
pF1KE1 CELAEED---FLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVR-LHAL
... : : : . : .::: :::.:. :. .:.. : . . .
NP_001 TIISHYDGRQFPKVVGGFDR------VLLDAPCSGTGVISK---DPAVKTNKDEKDILRC
440 450 460 470 480
340 350 360 370 380
pF1KE1 AGFQQRALCHAL-----TFPSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA
: .:.. : :. : . ::: :::. :::: :: ::.. ::.:.
NP_001 AHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKR--NVRLVPTGLD
490 500 510 520 530 540
390 400 410 420 430 440
pF1KE1 WPHRGLSTF------PGAEHCLRASPETTLSSGFFVAVIERVE--VPSSASQAKASA-PE
. ..:.. : :. . : :.: .:::.: ... .:.: . . .: :
NP_001 FGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSETATPT
550 560 570 580 590 600
450 460
pF1KE1 RT--PSPAPKRKKRQQRA--AAGACTPPCT
. :. :: .. .: : : ::
NP_001 NVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTVP
610 620 630 640 650 660
>>NP_001245238 (OMIM: 164031) probable 28S rRNA (cytosin (845 aa)
initn: 276 init1: 232 opt: 380 Z-score: 394.2 bits: 83.1 E(85289): 3.2e-15
Smith-Waterman score: 395; 32.2% identity (54.5% similar) in 354 aa overlap (131-460:336-662)
110 120 130 140 150
pF1KE1 RLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFV--RVNTLKTCSDDVVDYFKRQG
:...:: : :.::::: :... . .:
NP_001 DLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRG
310 320 330 340 350 360
160 170 180 190 200 210
pF1KE1 FSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLP
. :: : :: :.:. ... . : : ::: .:: .: ::
NP_001 VN-------LDPL----GKWSKTG-----LVVYDSSVPIGATPEYLAGHYMLQGASSMLP
370 380 390 400
220 230 240 250 260 270
pF1KE1 AMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC
.: : : ...: : :::.:::..: :.:: : :.: : .:.:: :.. : : ::.
NP_001 VMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTN
410 420 430 440 450 460
280 290 300 310 320 330
pF1KE1 CELAEED---FLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVR-LHAL
... : : : . : .::: :::.:. :. .:.. : . . .
NP_001 TIISHYDGRQFPKVVGGFDR------VLLDAPCSGTGVISK---DPAVKTNKDEKDILRC
470 480 490 500 510 520
340 350 360 370 380
pF1KE1 AGFQQRALCHAL-----TFPSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA
: .:.. : :. : . ::: :::. :::: :: ::.. ::.:.
NP_001 AHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKR--NVRLVPTGLD
530 540 550 560 570
390 400 410 420 430 440
pF1KE1 WPHRGLSTF------PGAEHCLRASPETTLSSGFFVAVIERVE--VPSSASQAKASA-PE
. ..:.. : :. . : :.: .:::.: ... .:.: . . .: :
NP_001 FGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSETATPT
580 590 600 610 620 630
450 460
pF1KE1 RT--PSPAPKRKKRQQRA--AAGACTPPCT
. :. :: .. .: : : ::
NP_001 NVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTVP
640 650 660 670 680 690
466 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:10:30 2016 done: Mon Nov 7 02:10:31 2016
Total Scan time: 9.840 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]