FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1439, 129 aa
  1>>>pF1KE1439 129 - 129 aa - 129 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7016+/-0.000254; mu= 15.3410+/- 0.016
 mean_var=75.8640+/-14.789, 0's: 0 Z-trim(122.2): 4  B-trim: 30 in 1/55
 Lambda= 0.147250
 statistics sampled from 40055 (40062) to 40055 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.813), E-opt: 0.2 (0.47), width:  16
 Scan time:  5.190

The best scores are:                                      opt bits E(85289)
NP_057723 (OMIM: 605914) tumor necrosis factor rec ( 129)  908 200.7 5.3e-52


>>NP_057723 (OMIM: 605914) tumor necrosis factor recepto  (129 aa)
 initn: 908 init1: 908 opt: 908  Z-score: 1054.5  bits: 200.7 E(85289): 5.3e-52
Smith-Waterman score: 908; 100.0% identity (100.0% similar) in 129 aa overlap (1-129:1-129)

               10        20        30        40        50        60
pF1KE1 MARGSLRRLLRLLVLGLWLALLRSVAGEQAPGTAPCSRGSSWSADLDKCMDCASCRARPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MARGSLRRLLRLLVLGLWLALLRSVAGEQAPGTAPCSRGSSWSADLDKCMDCASCRARPH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SDFCLGCAAAPPAPFRLLWPILGGALSLTFVLGLLSGFLVWRRCRRREKFTTPIEETGGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SDFCLGCAAAPPAPFRLLWPILGGALSLTFVLGLLSGFLVWRRCRRREKFTTPIEETGGE
               70        80        90       100       110       120

                
pF1KE1 GCPAVALIQ
       :::::::::
NP_057 GCPAVALIQ
                




129 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:35:50 2016 done: Mon Nov  7 02:35:51 2016
 Total Scan time:  5.190 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]