FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1438, 295 aa
  1>>>pF1KE1438 295 - 295 aa - 295 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1502+/-0.000333; mu= 15.9325+/- 0.021
 mean_var=58.3289+/-12.038, 0's: 0 Z-trim(113.5): 24  B-trim: 0 in 0/50
 Lambda= 0.167932
 statistics sampled from 22884 (22899) to 22884 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.268), width:  16
 Scan time:  6.240

The best scores are:                                      opt bits E(85289)
NP_061833 (OMIM: 606628,606664) glycine N-methyltr ( 295) 2018 497.1 1.7e-140
NP_001305794 (OMIM: 606628,606664) glycine N-methy ( 276) 1038 259.7 4.8e-69


>>NP_061833 (OMIM: 606628,606664) glycine N-methyltransf  (295 aa)
 initn: 2018 init1: 2018 opt: 2018  Z-score: 2643.3  bits: 497.1 E(85289): 1.7e-140
Smith-Waterman score: 2018; 100.0% identity (100.0% similar) in 295 aa overlap (1-295:1-295)

               10        20        30        40        50        60
pF1KE1 MVDSVYRTRSLGVAAEGLPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MVDSVYRTRSLGVAAEGLPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRHEPAFDKWVIEEANWMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRHEPAFDKWVIEEANWMT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LDKDVPQSAEGGFDAVICLGNSFAHLPDCKGDQSEHRLALKNIASMVRAGGLLVIDHRNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 LDKDVPQSAEGGFDAVICLGNSFAHLPDCKGDQSEHRLALKNIASMVRAGGLLVIDHRNY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 DHILSTGCAPPGKNIYYKSDLTKDVTTSVLIVNNKAHMVTLDYTVQVPGAGQDGSPGLSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DHILSTGCAPPGKNIYYKSDLTKDVTTSVLIVNNKAHMVTLDYTVQVPGAGQDGSPGLSK
              190       200       210       220       230       240

              250       260       270       280       290     
pF1KE1 FRLSYYPHCLASFTELLQAAFGGKCQHSVLGDFKPYKPGQTYIPCYFIHVLKRTD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 FRLSYYPHCLASFTELLQAAFGGKCQHSVLGDFKPYKPGQTYIPCYFIHVLKRTD
              250       260       270       280       290     

>>NP_001305794 (OMIM: 606628,606664) glycine N-methyltra  (276 aa)
 initn: 1038 init1: 1038 opt: 1038  Z-score: 1360.6  bits: 259.7 E(85289): 4.8e-69
Smith-Waterman score: 1852; 93.6% identity (93.6% similar) in 295 aa overlap (1-295:1-276)

               10        20        30        40        50        60
pF1KE1 MVDSVYRTRSLGVAAEGLPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVDSVYRTRSLGVAAEGLPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRHEPAFDKWVIEEANWMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRHEPAFDKWVIEEANWMT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LDKDVPQSAEGGFDAVICLGNSFAHLPDCKGDQSEHRLALKNIASMVRAGGLLVIDHRNY
       :::::::::::::::::::::::::::::::                   ::::::::::
NP_001 LDKDVPQSAEGGFDAVICLGNSFAHLPDCKG-------------------GLLVIDHRNY
              130       140       150                          160 

              190       200       210       220       230       240
pF1KE1 DHILSTGCAPPGKNIYYKSDLTKDVTTSVLIVNNKAHMVTLDYTVQVPGAGQDGSPGLSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DHILSTGCAPPGKNIYYKSDLTKDVTTSVLIVNNKAHMVTLDYTVQVPGAGQDGSPGLSK
             170       180       190       200       210       220 

              250       260       270       280       290     
pF1KE1 FRLSYYPHCLASFTELLQAAFGGKCQHSVLGDFKPYKPGQTYIPCYFIHVLKRTD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FRLSYYPHCLASFTELLQAAFGGKCQHSVLGDFKPYKPGQTYIPCYFIHVLKRTD
             230       240       250       260       270      




295 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:04:24 2016 done: Mon Nov  7 00:04:25 2016
 Total Scan time:  6.240 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]