FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1430, 282 aa
  1>>>pF1KE1430 282 - 282 aa - 282 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5225+/-0.000311; mu= 15.3588+/- 0.019
 mean_var=80.9122+/-16.099, 0's: 0 Z-trim(118.5): 9  B-trim: 470 in 1/50
 Lambda= 0.142583
 statistics sampled from 31506 (31515) to 31506 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.37), width:  16
 Scan time:  6.980

The best scores are:                                      opt bits E(85289)
NP_001203 (OMIM: 601269) complement component 1 Q  ( 282) 1896 399.0 5.3e-111


>>NP_001203 (OMIM: 601269) complement component 1 Q subc  (282 aa)
 initn: 1896 init1: 1896 opt: 1896  Z-score: 2113.9  bits: 399.0 E(85289): 5.3e-111
Smith-Waterman score: 1896; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282)

               10        20        30        40        50        60
pF1KE1 MLPLLRCVPRVLGSSVAGLRAAAPASPFRQLLQPAPRLCTRPFGLLSVRAGSERRPGLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLPLLRCVPRVLGSSVAGLRAAAPASPFRQLLQPAPRLCTRPFGLLSVRAGSERRPGLLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PRGPCACGCGCGSLHTDGDKAFVDFLSDEIKEERKIQKHKTLPKMSGGWELELNGTEAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRGPCACGCGCGSLHTDGDKAFVDFLSDEIKEERKIQKHKTLPKMSGGWELELNGTEAKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VRKVAGEKITVTFNINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRKVAGEKITVTFNINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 ALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTLNTDSLDWALYDHLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTLNTDSLDWALYDHLM
              190       200       210       220       230       240

              250       260       270       280  
pF1KE1 DFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSFVKSQ
       ::::::::::::::::::::::::::::::::::::::::::
NP_001 DFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSFVKSQ
              250       260       270       280  




282 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:30:16 2016 done: Mon Nov  7 01:30:17 2016
 Total Scan time:  6.980 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]