FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1426, 419 aa
  1>>>pF1KE1426 419 - 419 aa - 419 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1324+/-0.000918; mu= 14.5491+/- 0.055
 mean_var=139.5706+/-26.388, 0's: 0 Z-trim(110.4): 71  B-trim: 39 in 1/52
 Lambda= 0.108562
 statistics sampled from 11526 (11596) to 11526 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.356), width:  16
 Scan time:  2.750

The best scores are:                                      opt bits E(32554)
CCDS43285.1 VEGFC gene_id:7424|Hs108|chr4          ( 419) 3029 486.1 2.7e-137
CCDS14166.1 VEGFD gene_id:2277|Hs108|chrX          ( 354)  865 147.1 2.6e-35


>>CCDS43285.1 VEGFC gene_id:7424|Hs108|chr4               (419 aa)
 initn: 3029 init1: 3029 opt: 3029  Z-score: 2578.3  bits: 486.1 E(32554): 2.7e-137
Smith-Waterman score: 3029; 100.0% identity (100.0% similar) in 419 aa overlap (1-419:1-419)

               10        20        30        40        50        60
pF1KE1 MHLLGFFSVACSLLAAALLPGPREAPAAAAAFESGLDLSDAEPDAGEATAYASKDLEEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MHLLGFFSVACSLLAAALLPGPREAPAAAAAFESGLDLSDAEPDAGEATAYASKDLEEQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RSVSSVDELMTVLYPEYWKMYKCQLRKGGWQHNREQANLNSRTEETIKFAAAHYNTEILK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RSVSSVDELMTVLYPEYWKMYKCQLRKGGWQHNREQANLNSRTEETIKFAAAHYNTEILK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SIDNEWRKTQCMPREVCIDVGKEFGVATNTFFKPPCVSVYRCGGCCNSEGLQCMNTSTSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SIDNEWRKTQCMPREVCIDVGKEFGVATNTFFKPPCVSVYRCGGCCNSEGLQCMNTSTSY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LSKTLFEITVPLSQGPKPVTISFANHTSCRCMSKLDVYRQVHSIIRRSLPATLPQCQAAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LSKTLFEITVPLSQGPKPVTISFANHTSCRCMSKLDVYRQVHSIIRRSLPATLPQCQAAN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 KTCPTNYMWNNHICRCLAQEDFMFSSDAGDDSTDGFHDICGPNKELDEETCQCVCRAGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KTCPTNYMWNNHICRCLAQEDFMFSSDAGDDSTDGFHDICGPNKELDEETCQCVCRAGLR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 PASCGPHKELDRNSCQCVCKNKLFPSQCGANREFDENTCQCVCKRTCPRNQPLNPGKCAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PASCGPHKELDRNSCQCVCKNKLFPSQCGANREFDENTCQCVCKRTCPRNQPLNPGKCAC
              310       320       330       340       350       360

              370       380       390       400       410         
pF1KE1 ECTESPQKCLLKGKKFHHQTCSCYRRPCTNRQKACEPGFSYSEEVCRCVPSYWKRPQMS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ECTESPQKCLLKGKKFHHQTCSCYRRPCTNRQKACEPGFSYSEEVCRCVPSYWKRPQMS
              370       380       390       400       410         

>>CCDS14166.1 VEGFD gene_id:2277|Hs108|chrX               (354 aa)
 initn: 826 init1: 508 opt: 865  Z-score: 747.4  bits: 147.1 E(32554): 2.6e-35
Smith-Waterman score: 892; 39.2% identity (63.3% similar) in 357 aa overlap (57-407:41-337)

         30        40        50        60        70        80      
pF1KE1 AAAAAFESGLDLSDAEPDAGEATAYASKDLEEQLRSVSSVDELMTVLYPEYWKMYKCQLR
                                     :.:.:..::..::. . . : ::...:.::
CCDS14 FMMLYVQLVQGSSNEHGPVKRSSQSTLERSEQQIRAASSLEELLRITHSEDWKLWRCRLR
               20        30        40        50        60        70

         90       100         110       120       130       140    
pF1KE1 KGGWQHNREQANLNSRT--EETIKFAAAHYNTEILKSIDNEWRKTQCMPREVCIDVGKEF
         ..      ....::.  ... .:::. :. : :: ::.::..::: :::.:..:..:.
CCDS14 LKSF------TSMDSRSASHRSTRFAATFYDIETLKVIDEEWQRTQCSPRETCVEVASEL
                     80        90       100       110       120    

          150       160       170       180       190       200    
pF1KE1 GVATNTFFKPPCVSVYRCGGCCNSEGLQCMNTSTSYLSKTLFEITVPLSQGPKPVTISFA
       : .::::::::::.:.::::::: :.: ::::::::.:: ::::.:::.. :. : .. :
CCDS14 GKSTNTFFKPPCVNVFRCGGCCNEESLICMNTSTSYISKQLFEISVPLTSVPELVPVKVA
          130       140       150       160       170       180    

          210       220       230          240       250       260 
pF1KE1 NHTSCRCMSKLDVYRQVHSIIRRSLPATLPQ---CQAANKTCPTNYMWNNHICRCLAQED
       :::.:.:.    . :. .::::::.   .:.   :. ..: :: ...:... :.:. ::.
CCDS14 NHTGCKCLPT--APRHPYSIIRRSI--QIPEEDRCSHSKKLCPIDMLWDSNKCKCVLQEE
          190         200         210       220       230       240

             270       280       290       300       310       320 
pF1KE1 FMFSSDAGDDSTDGFHDICGPNKELDEETCQCVCRAGLRPASCGPHKELDRNSCQCVCKN
                .   : .:    ...:.:            :: ::::              
CCDS14 ---------NPLAGTED----HSHLQE------------PALCGPHMM------------
                           250                   260               

             330       340       350       360        370       380
pF1KE1 KLFPSQCGANREFDENTCQCVCKRTCPRNQPLNPGKCAC-ECTESPQKCLLKGKKFHHQT
                   :::. :.::::  ::..   .: .:.: :: :: . :  : : :: .:
CCDS14 ------------FDEDRCECVCKTPCPKDLIQHPKNCSCFECKESLETCCQKHKLFHPDT
                       270       280       290       300       310 

              390       400       410              
pF1KE1 CSCYRRPCTNRQKACEPGFSYSEEVCRCVPSYWKRPQMS     
       :::  : :  . . :  : .   . ::                 
CCDS14 CSCEDR-CPFHTRPCASGKTACAKHCRFPKEKRAAQGPHSRKNP
              320       330       340       350    




419 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:54:30 2016 done: Sun Nov  6 23:54:30 2016
 Total Scan time:  2.750 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]