FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1408, 147 aa
  1>>>pF1KE1408 147 - 147 aa - 147 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3431+/-0.00065; mu= 11.1911+/- 0.039
 mean_var=58.6725+/-11.777, 0's: 0 Z-trim(109.5): 15  B-trim: 0 in 0/51
 Lambda= 0.167439
 statistics sampled from 10918 (10928) to 10918 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.336), width:  16
 Scan time:  1.800

The best scores are:                                      opt bits E(32554)
CCDS2894.1 FHIT gene_id:2272|Hs108|chr3            ( 147)  996 248.3 1.3e-66


>>CCDS2894.1 FHIT gene_id:2272|Hs108|chr3                 (147 aa)
 initn: 996 init1: 996 opt: 996  Z-score: 1309.4  bits: 248.3 E(32554): 1.3e-66
Smith-Waterman score: 996; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)

               10        20        30        40        50        60
pF1KE1 MSFRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MSFRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 TTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 TTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKH
               70        80        90       100       110       120

              130       140       
pF1KE1 DKEDFPASWRSEEEMAAEAAALRVYFQ
       :::::::::::::::::::::::::::
CCDS28 DKEDFPASWRSEEEMAAEAAALRVYFQ
              130       140       




147 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:23:43 2016 done: Sun Nov  6 22:23:43 2016
 Total Scan time:  1.800 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]