FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1396, 67 aa
  1>>>pF1KE1396 67 - 67 aa - 67 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 3.9933+/-0.000225; mu= 13.8283+/- 0.014
 mean_var=48.3252+/- 9.615, 0's: 0 Z-trim(123.6): 8  B-trim: 73 in 1/52
 Lambda= 0.184496
 statistics sampled from 43716 (43727) to 43716 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.862), E-opt: 0.2 (0.513), width:  16
 Scan time:  3.920

The best scores are:                                      opt bits E(85289)
NP_061131 (OMIM: 606611) beta-defensin 103 precurs (  67)  479 133.3 2.9e-32
NP_004933 (OMIM: 602215) beta-defensin 4A precurso (  64)  187 55.5   7e-09
NP_001032588 (OMIM: 615243) beta-defensin 114 prec (  69)  122 38.3  0.0012
NP_005209 (OMIM: 602056) beta-defensin 1 prepropro (  68)  115 36.4  0.0043


>>NP_061131 (OMIM: 606611) beta-defensin 103 precursor [  (67 aa)
 initn: 479 init1: 479 opt: 479  Z-score: 700.2  bits: 133.3 E(85289): 2.9e-32
Smith-Waterman score: 479; 100.0% identity (100.0% similar) in 67 aa overlap (1-67:1-67)

               10        20        30        40        50        60
pF1KE1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR
               10        20        30        40        50        60

              
pF1KE1 KCCRRKK
       :::::::
NP_061 KCCRRKK
              

>>NP_004933 (OMIM: 602215) beta-defensin 4A precursor [H  (64 aa)
 initn: 211 init1: 111 opt: 187  Z-score: 280.4  bits: 55.5 E(85289): 7e-09
Smith-Waterman score: 187; 42.4% identity (65.2% similar) in 66 aa overlap (1-65:1-63)

               10        20         30        40        50         
pF1KE1 MRIHYLLFALLFLFLVPVPG-HGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRG
       ::. ::::..::.::.:.::  ::: . .    :   :. :  . :  . .::: :.  :
NP_004 MRVLYLLFSFLFIFLMPLPGVFGGIGDPVT---CLKSGAICHPVFCPRRYKQIGTCGLPG
               10        20        30           40        50       

      60       
pF1KE1 RKCCRRKK
        :::..  
NP_004 TKCCKKP 
        60     

>>NP_001032588 (OMIM: 615243) beta-defensin 114 precurso  (69 aa)
 initn: 139 init1:  74 opt: 122  Z-score: 186.5  bits: 38.3 E(85289): 0.0012
Smith-Waterman score: 122; 34.8% identity (57.6% similar) in 66 aa overlap (1-66:1-61)

               10        20        30        40        50        60
pF1KE1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR
       ::: : :  : .. .. .:.   ..:. .   :  : :::   .:: .:.::  ::   .
NP_001 MRIFYYLHFLCYVTFI-LPATCTLVNADR---CTKRYGRCKR-DCLESEKQIDICSLPRK
               10         20           30         40        50     

                     
pF1KE1 KCCRRKK       
        :: .:        
NP_001 ICCTEKLYEEDDMF
          60         

>>NP_005209 (OMIM: 602056) beta-defensin 1 preproprotein  (68 aa)
 initn: 122 init1:  66 opt: 115  Z-score: 176.5  bits: 36.4 E(85289): 0.0043
Smith-Waterman score: 115; 35.7% identity (57.1% similar) in 70 aa overlap (1-64:1-68)

               10        20            30        40        50      
pF1KE1 MRIHYLLFALLFLFLVPVPGHGGIINTL----QKYYCRVRGGRCAVLSCLPKEEQI-GKC
       ::  :::.  : :.:  . . :.... :    ..: :   ::.:   .: :   .: : :
NP_005 MRTSYLLLFTLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCLYSAC-PIFTKIQGTC
               10        20        30        40         50         

          60        
pF1KE1 STRGR-KCCRRKK
         ::. :::.   
NP_005 Y-RGKAKCCK   
      60            




67 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:07:07 2016 done: Mon Nov  7 04:07:08 2016
 Total Scan time:  3.920 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]