FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1392, 93 aa
  1>>>pF1KE1392 93 - 93 aa - 93 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8489+/-0.000256; mu= 11.3373+/- 0.016
 mean_var=52.4440+/-10.550, 0's: 0 Z-trim(119.5): 4  B-trim: 1915 in 1/55
 Lambda= 0.177103
 statistics sampled from 33633 (33637) to 33633 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.394), width:  16
 Scan time:  4.370

The best scores are:                                      opt bits E(85289)
NP_473364 (OMIM: 600807,606531) secretoglobin fami (  93)  582 155.4 1.2e-38
NP_443095 (OMIM: 606500) secretoglobin family 3A m ( 104)  195 56.6 7.6e-09


>>NP_473364 (OMIM: 600807,606531) secretoglobin family 3  (93 aa)
 initn: 582 init1: 582 opt: 582  Z-score: 814.9  bits: 155.4 E(85289): 1.2e-38
Smith-Waterman score: 582; 100.0% identity (100.0% similar) in 93 aa overlap (1-93:1-93)

               10        20        30        40        50        60
pF1KE1 MKLVTIFLLVTISLCSYSATAFLINKVPLPVDKLAPLPLDNILPFMDPLKLLLKTLGISV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 MKLVTIFLLVTISLCSYSATAFLINKVPLPVDKLAPLPLDNILPFMDPLKLLLKTLGISV
               10        20        30        40        50        60

               70        80        90   
pF1KE1 EHLVEGLRKCVNELGPEASEAVKKLLEALSHLV
       :::::::::::::::::::::::::::::::::
NP_473 EHLVEGLRKCVNELGPEASEAVKKLLEALSHLV
               70        80        90   

>>NP_443095 (OMIM: 606500) secretoglobin family 3A membe  (104 aa)
 initn: 231 init1: 165 opt: 195  Z-score: 279.8  bits: 56.6 E(85289): 7.6e-09
Smith-Waterman score: 208; 45.5% identity (63.4% similar) in 101 aa overlap (1-92:1-100)

               10        20           30              40        50 
pF1KE1 MKLVTIFLLVTISLCSYSATAFLINK---VPLPVDKLAPLP------LDNILPFMDPLKL
       :::.... : .   :: ::.:::...   :  ::  :          : : :  ..::::
NP_443 MKLAALLGLCVALSCS-SAAAFLVGSAKPVAQPVAALESAAEAGAGTLANPLGTLNPLKL
               10         20        30        40        50         

              60        70        80        90      
pF1KE1 LLKTLGISVEHLVEGLRKCVNELGPEASEAVKKLLEALSHLV   
       ::..::: :.::.:: .::: ::::.:  ::: :   :. :    
NP_443 LLSSLGIPVNHLIEGSQKCVAELGPQAVGAVKALKALLGALTVFG
      60        70        80        90       100    




93 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:34:07 2016 done: Mon Nov  7 00:34:07 2016
 Total Scan time:  4.370 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]