FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1389, 383 aa
  1>>>pF1KE1389 383 - 383 aa - 383 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4561+/-0.000911; mu= 15.8328+/- 0.055
 mean_var=66.4701+/-13.403, 0's: 0 Z-trim(106.1): 22  B-trim: 0 in 0/50
 Lambda= 0.157312
 statistics sampled from 8759 (8765) to 8759 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.269), width:  16
 Scan time:  2.490

The best scores are:                                      opt bits E(32554)
CCDS1763.1 BRE gene_id:9577|Hs108|chr2             ( 383) 2626 604.9 3.8e-173
CCDS1764.1 BRE gene_id:9577|Hs108|chr2             ( 415) 2497 575.6 2.7e-164
CCDS1765.1 BRE gene_id:9577|Hs108|chr2             ( 376) 2494 574.9 3.9e-164


>>CCDS1763.1 BRE gene_id:9577|Hs108|chr2                  (383 aa)
 initn: 2626 init1: 2626 opt: 2626  Z-score: 3221.9  bits: 604.9 E(32554): 3.8e-173
Smith-Waterman score: 2626; 100.0% identity (100.0% similar) in 383 aa overlap (1-383:1-383)

               10        20        30        40        50        60
pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
              310       320       330       340       350       360

              370       380   
pF1KE1 RAKAYFKTFVPQFQEAAFANGKL
       :::::::::::::::::::::::
CCDS17 RAKAYFKTFVPQFQEAAFANGKL
              370       380   

>>CCDS1764.1 BRE gene_id:9577|Hs108|chr2                  (415 aa)
 initn: 2494 init1: 2494 opt: 2497  Z-score: 3063.2  bits: 575.6 E(32554): 2.7e-164
Smith-Waterman score: 2497; 95.8% identity (96.6% similar) in 385 aa overlap (1-382:1-385)

               10        20        30        40        50        60
pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
              310       320       330       340       350       360

                 370       380                                
pF1KE1 RAKA---YFKTFVPQFQEAAFANGKL                             
       :::.      .  :  :  ::: .:                              
CCDS17 RAKGCQGSRDACSPWEQVLAFAVAKTGCKLLQPQRNWPSSRGPPWRASEGERTAQ
              370       380       390       400       410     

>>CCDS1765.1 BRE gene_id:9577|Hs108|chr2                  (376 aa)
 initn: 2494 init1: 2494 opt: 2494  Z-score: 3060.2  bits: 574.9 E(32554): 3.9e-164
Smith-Waterman score: 2494; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363)

               10        20        30        40        50        60
pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
              310       320       330       340       350       360

              370       380   
pF1KE1 RAKAYFKTFVPQFQEAAFANGKL
       :::                    
CCDS17 RAKRESNRDGEESSSA       
              370             




383 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:52:48 2016 done: Mon Nov  7 02:52:48 2016
 Total Scan time:  2.490 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]