Result of FASTA (omim) for
pFN21AE1385
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1385, 125 aa
1>>>pF1KE1385 125 - 125 aa - 125 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.4222+/-0.000311; mu= 14.9060+/- 0.019
mean_var=48.9722+/- 9.983, 0's: 0 Z-trim(114.4): 23 B-trim: 1583 in 1/52
Lambda= 0.183273
statistics sampled from 24241 (24264) to 24241 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.284), width: 16
Scan time: 3.770
The best scores are: opt bits E(85289)
NP_003632 (OMIM: 604456) interferon-induced transm ( 125) 827 225.7 1.6e-59
NP_066362 (OMIM: 605579,614680) interferon-induced ( 133) 569 157.5 5.7e-39
NP_006426 (OMIM: 605578) interferon-induced transm ( 132) 547 151.6 3.2e-37
NP_001020466 (OMIM: 610967,614757) interferon-indu ( 132) 270 78.4 3.5e-15
XP_016878377 (OMIM: 128200,614386) PREDICTED: prol ( 340) 142 44.8 0.00012
NP_660282 (OMIM: 128200,614386) proline-rich trans ( 340) 142 44.8 0.00012
XP_016878378 (OMIM: 128200,614386) PREDICTED: prol ( 340) 142 44.8 0.00012
XP_016878376 (OMIM: 128200,614386) PREDICTED: prol ( 346) 142 44.8 0.00012
XP_011544017 (OMIM: 128200,614386) PREDICTED: prol ( 394) 142 44.9 0.00013
XP_011544018 (OMIM: 128200,614386) PREDICTED: prol ( 394) 142 44.9 0.00013
NP_001243371 (OMIM: 128200,614386) proline-rich tr ( 394) 142 44.9 0.00013
>>NP_003632 (OMIM: 604456) interferon-induced transmembr (125 aa)
initn: 827 init1: 827 opt: 827 Z-score: 1189.8 bits: 225.7 E(85289): 1.6e-59
Smith-Waterman score: 827; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)
10 20 30 40 50 60
pF1KE1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWSLFNTLFLNWCCLGFIAFAYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWSLFNTLFLNWCCLGFIAFAYS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGFILLLVFGSVTVYHIMLQIIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGFILLLVFGSVTVYHIMLQIIQ
70 80 90 100 110 120
pF1KE1 EKRGY
:::::
NP_003 EKRGY
>>NP_066362 (OMIM: 605579,614680) interferon-induced tra (133 aa)
initn: 590 init1: 564 opt: 569 Z-score: 820.7 bits: 157.5 E(85289): 5.7e-39
Smith-Waterman score: 569; 83.3% identity (90.7% similar) in 108 aa overlap (1-106:22-129)
10 20 30
pF1KE1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVW
: :::::::::::: . : ::::.:.:::::::::::
NP_066 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE1 SLFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIG
:::::::.: :::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIL
70 80 90 100 110 120
100 110 120
pF1KE1 FILL--LVFGSVTVYHIMLQIIQEKRGY
.:.. :.:
NP_066 LIVIPVLIFQAYG
130
>>NP_006426 (OMIM: 605578) interferon-induced transmembr (132 aa)
initn: 564 init1: 543 opt: 547 Z-score: 789.3 bits: 151.6 E(85289): 3.2e-37
Smith-Waterman score: 547; 80.2% identity (91.5% similar) in 106 aa overlap (1-106:21-126)
10 20 30 40
pF1KE1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWS
: :::.:::.::.: . : ::::.:.::::::::::::
NP_006 MNHIVQTFSPVNSGQPPNYEMLKEEQEVAMLGVPHNPAPPMSTVIHIRSETSVPDHVVWS
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE1 LFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGF
::::::.: :::::::::::::::::::::::::::::::::::::::::::::.::: .
NP_006 LFNTLFMNTCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGIFMTILL
70 80 90 100 110 120
110 120
pF1KE1 ILLLVFGSVTVYHIMLQIIQEKRGY
:.. :.
NP_006 IIIPVLVVQAQR
130
>>NP_001020466 (OMIM: 610967,614757) interferon-induced (132 aa)
initn: 276 init1: 255 opt: 270 Z-score: 393.5 bits: 78.4 E(85289): 3.5e-15
Smith-Waterman score: 270; 42.1% identity (73.7% similar) in 95 aa overlap (13-102:12-105)
10 20 30 40 50
pF1KE1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVP-DHVVWSLFNTLFLNWCCLGFIAFAY
:: . :.... . : ::..::.:.::.:: :::::.:.::
NP_001 MDTAYPREDTRAPTPSKAGAHTALTLGAPHPPPRDHLIWSVFSTLYLNLCCLGFLALAY
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 SVKSRDRKMVGDVTGAQAYASTAKCLNI----WALILGILMTIGFILLLVFGSVTVYHIM
:.:.::.:.:::. .:. ..: ::: :: :.:. .:. .:...
NP_001 SIKARDQKVVGDLEAARRFGSKAKCYNILAAMWTLVPPLLL-LGLVVTGALHLARLAKDS
60 70 80 90 100 110
120
pF1KE1 LQIIQEKRGY
NP_001 AAFFSTKFDDADYD
120 130
>>XP_016878377 (OMIM: 128200,614386) PREDICTED: proline- (340 aa)
initn: 143 init1: 123 opt: 142 Z-score: 204.6 bits: 44.8 E(85289): 0.00012
Smith-Waterman score: 142; 33.0% identity (63.6% similar) in 88 aa overlap (11-98:243-329)
10 20 30 40
pF1KE1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWS
:. ::. : : . .. . :... .
XP_016 GAPPRVLQQLVEEDRMRRAHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYIILA
220 230 240 250 260 270
50 60 70 80 90 100
pF1KE1 LFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGF
... . : ....::::.: ::. . ::: ::: . .:: :.: ::. :.:. :
XP_016 ILSCFCPMWP-VNIVAFAYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGVLIIIAS
280 290 300 310 320 330
110 120
pF1KE1 ILLLVFGSVTVYHIMLQIIQEKRGY
XP_016 CVINLGVYK
340
>>NP_660282 (OMIM: 128200,614386) proline-rich transmemb (340 aa)
initn: 143 init1: 123 opt: 142 Z-score: 204.6 bits: 44.8 E(85289): 0.00012
Smith-Waterman score: 142; 33.0% identity (63.6% similar) in 88 aa overlap (11-98:243-329)
10 20 30 40
pF1KE1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWS
:. ::. : : . .. . :... .
NP_660 GAPPRVLQQLVEEDRMRRAHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYIILA
220 230 240 250 260 270
50 60 70 80 90 100
pF1KE1 LFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGF
... . : ....::::.: ::. . ::: ::: . .:: :.: ::. :.:. :
NP_660 ILSCFCPMWP-VNIVAFAYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGVLIIIAS
280 290 300 310 320 330
110 120
pF1KE1 ILLLVFGSVTVYHIMLQIIQEKRGY
NP_660 CVINLGVYK
340
>>XP_016878378 (OMIM: 128200,614386) PREDICTED: proline- (340 aa)
initn: 143 init1: 123 opt: 142 Z-score: 204.6 bits: 44.8 E(85289): 0.00012
Smith-Waterman score: 142; 33.0% identity (63.6% similar) in 88 aa overlap (11-98:243-329)
10 20 30 40
pF1KE1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWS
:. ::. : : . .. . :... .
XP_016 GAPPRVLQQLVEEDRMRRAHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYIILA
220 230 240 250 260 270
50 60 70 80 90 100
pF1KE1 LFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGF
... . : ....::::.: ::. . ::: ::: . .:: :.: ::. :.:. :
XP_016 ILSCFCPMWP-VNIVAFAYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGVLIIIAS
280 290 300 310 320 330
110 120
pF1KE1 ILLLVFGSVTVYHIMLQIIQEKRGY
XP_016 CVINLGDAA
340
>>XP_016878376 (OMIM: 128200,614386) PREDICTED: proline- (346 aa)
initn: 143 init1: 123 opt: 142 Z-score: 204.5 bits: 44.8 E(85289): 0.00012
Smith-Waterman score: 142; 33.0% identity (63.6% similar) in 88 aa overlap (11-98:243-329)
10 20 30 40
pF1KE1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWS
:. ::. : : . .. . :... .
XP_016 GAPPRVLQQLVEEDRMRRAHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYIILA
220 230 240 250 260 270
50 60 70 80 90 100
pF1KE1 LFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGF
... . : ....::::.: ::. . ::: ::: . .:: :.: ::. :.:. :
XP_016 ILSCFCPMWP-VNIVAFAYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGVLIIIAS
280 290 300 310 320 330
110 120
pF1KE1 ILLLVFGSVTVYHIMLQIIQEKRGY
XP_016 CVINLGGCCMSLKHQ
340
>>XP_011544017 (OMIM: 128200,614386) PREDICTED: proline- (394 aa)
initn: 143 init1: 123 opt: 142 Z-score: 203.6 bits: 44.9 E(85289): 0.00013
Smith-Waterman score: 142; 33.0% identity (63.6% similar) in 88 aa overlap (11-98:243-329)
10 20 30 40
pF1KE1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWS
:. ::. : : . .. . :... .
XP_011 GAPPRVLQQLVEEDRMRRAHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYIILA
220 230 240 250 260 270
50 60 70 80 90 100
pF1KE1 LFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGF
... . : ....::::.: ::. . ::: ::: . .:: :.: ::. :.:. :
XP_011 ILSCFCPMWP-VNIVAFAYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGVLIIIAS
280 290 300 310 320 330
110 120
pF1KE1 ILLLVFGSVTVYHIMLQIIQEKRGY
XP_011 CVINLGGEWGLGTGRGGMEGLARAALLTPAPALSCLSSLPLLCLSLSPPPPVCPSLSSPT
340 350 360 370 380 390
>>XP_011544018 (OMIM: 128200,614386) PREDICTED: proline- (394 aa)
initn: 143 init1: 123 opt: 142 Z-score: 203.6 bits: 44.9 E(85289): 0.00013
Smith-Waterman score: 142; 33.0% identity (63.6% similar) in 88 aa overlap (11-98:243-329)
10 20 30 40
pF1KE1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWS
:. ::. : : . .. . :... .
XP_011 GAPPRVLQQLVEEDRMRRAHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYIILA
220 230 240 250 260 270
50 60 70 80 90 100
pF1KE1 LFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGF
... . : ....::::.: ::. . ::: ::: . .:: :.: ::. :.:. :
XP_011 ILSCFCPMWP-VNIVAFAYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGVLIIIAS
280 290 300 310 320 330
110 120
pF1KE1 ILLLVFGSVTVYHIMLQIIQEKRGY
XP_011 CVINLGGEWGLGTGRGGMEGLARAALLTPAPALSCLSSLPLLCLSLSPPPPVCPSLSSPT
340 350 360 370 380 390
125 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:59:26 2016 done: Mon Nov 7 02:59:27 2016
Total Scan time: 3.770 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]