FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1385, 125 aa
  1>>>pF1KE1385 125 - 125 aa - 125 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5829+/-0.000669; mu= 14.1401+/- 0.040
 mean_var=51.3981+/-10.528, 0's: 0 Z-trim(108.2): 17  B-trim: 0 in 0/50
 Lambda= 0.178896
 statistics sampled from 10050 (10063) to 10050 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.309), width:  16
 Scan time:  1.370

The best scores are:                                      opt bits E(32554)
CCDS41584.1 IFITM1 gene_id:8519|Hs108|chr11        ( 125)  821 219.0 6.1e-58
CCDS41585.1 IFITM3 gene_id:10410|Hs108|chr11       ( 133)  569 154.0 2.4e-38
CCDS41583.1 IFITM2 gene_id:10581|Hs108|chr11       ( 132)  547 148.3 1.2e-36
CCDS31323.1 IFITM5 gene_id:387733|Hs108|chr11      ( 132)  270 76.8 4.1e-15
CCDS53593.2 IFITM10 gene_id:402778|Hs108|chr11     ( 228)  245 70.5 5.6e-13


>>CCDS41584.1 IFITM1 gene_id:8519|Hs108|chr11             (125 aa)
 initn: 821 init1: 821 opt: 821  Z-score: 1153.7  bits: 219.0 E(32554): 6.1e-58
Smith-Waterman score: 821; 99.2% identity (99.2% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KE1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWSLFNTLFLNWCCLGFIAFAYS
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MHKEEHEVAVLGPPPSTILPRSTVINIHSETSVPDHVVWSLFNTLFLNWCCLGFIAFAYS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGFILLLVFGSVTVYHIMLQIIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGFILLLVFGSVTVYHIMLQIIQ
               70        80        90       100       110       120

            
pF1KE1 EKRGY
       :::::
CCDS41 EKRGY
            

>>CCDS41585.1 IFITM3 gene_id:10410|Hs108|chr11            (133 aa)
 initn: 590 init1: 564 opt: 569  Z-score: 801.8  bits: 154.0 E(32554): 2.4e-38
Smith-Waterman score: 569; 83.3% identity (90.7% similar) in 108 aa overlap (1-106:22-129)

                                    10        20        30         
pF1KE1                      MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVW
                            : :::::::::::: .   : ::::.:.:::::::::::
CCDS41 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW
               10        20        30        40        50        60

      40        50        60        70        80        90         
pF1KE1 SLFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIG
       :::::::.: ::::::::::::::::::::::::::::::::::::::::::::::::: 
CCDS41 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIL
               70        80        90       100       110       120

     100         110       120     
pF1KE1 FILL--LVFGSVTVYHIMLQIIQEKRGY
       .:..  :.:                   
CCDS41 LIVIPVLIFQAYG               
              130                  

>>CCDS41583.1 IFITM2 gene_id:10581|Hs108|chr11            (132 aa)
 initn: 564 init1: 543 opt: 547  Z-score: 771.2  bits: 148.3 E(32554): 1.2e-36
Smith-Waterman score: 547; 80.2% identity (91.5% similar) in 106 aa overlap (1-106:21-126)

                                   10        20        30        40
pF1KE1                     MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWS
                           : :::.:::.::.: .   : ::::.:.::::::::::::
CCDS41 MNHIVQTFSPVNSGQPPNYEMLKEEQEVAMLGVPHNPAPPMSTVIHIRSETSVPDHVVWS
               10        20        30        40        50        60

               50        60        70        80        90       100
pF1KE1 LFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGF
       ::::::.: :::::::::::::::::::::::::::::::::::::::::::::.::: .
CCDS41 LFNTLFMNTCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGIFMTILL
               70        80        90       100       110       120

              110       120     
pF1KE1 ILLLVFGSVTVYHIMLQIIQEKRGY
       :.. :.                   
CCDS41 IIIPVLVVQAQR             
              130               

>>CCDS31323.1 IFITM5 gene_id:387733|Hs108|chr11           (132 aa)
 initn: 276 init1: 255 opt: 270  Z-score: 384.8  bits: 76.8 E(32554): 4.1e-15
Smith-Waterman score: 270; 42.1% identity (73.7% similar) in 95 aa overlap (13-102:12-105)

               10        20        30         40        50         
pF1KE1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVP-DHVVWSLFNTLFLNWCCLGFIAFAY
                   ::  .     :.... .    : ::..::.:.::.:: :::::.:.::
CCDS31  MDTAYPREDTRAPTPSKAGAHTALTLGAPHPPPRDHLIWSVFSTLYLNLCCLGFLALAY
                10        20        30        40        50         

      60        70        80            90       100       110     
pF1KE1 SVKSRDRKMVGDVTGAQAYASTAKCLNI----WALILGILMTIGFILLLVFGSVTVYHIM
       :.:.::.:.:::. .:. ..: ::: ::    :.:.  .:. .:...             
CCDS31 SIKARDQKVVGDLEAARRFGSKAKCYNILAAMWTLVPPLLL-LGLVVTGALHLARLAKDS
      60        70        80        90       100        110        

         120         
pF1KE1 LQIIQEKRGY    
                     
CCDS31 AAFFSTKFDDADYD
      120       130  

>>CCDS53593.2 IFITM10 gene_id:402778|Hs108|chr11          (228 aa)
 initn: 243 init1: 223 opt: 245  Z-score: 346.5  bits: 70.5 E(32554): 5.6e-13
Smith-Waterman score: 251; 40.7% identity (71.3% similar) in 108 aa overlap (8-106:116-220)

                                      10                20         
pF1KE1                        MHKEEHEVAVLGAPPS--------TILPRSTVINIHS
                                     : . ::::.        :.   .:::... 
CCDS53 PAAPAPEPSASPPMAPTLFPMESKSSKTDSVRAAGAPPACKHLAEKKTMTNPTTVIEVYP
          90       100       110       120       130       140     

      30         40        50        60        70        80        
pF1KE1 ETS-VPDHVVWSLFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIW
       .:. : :. .::.:: ..::.:::::::.:::.: ::.:...:..::   :.::. .:: 
CCDS53 DTTEVNDYYLWSIFNFVYLNFCCLGFIALAYSLKVRDKKLLNDLNGAVEDAKTARLFNIT
         150       160       170       180       190       200     

       90       100       110       120     
pF1KE1 ALILGILMTIGFILLLVFGSVTVYHIMLQIIQEKRGY
       .   . : .  .::...:                   
CCDS53 S---SALAASCIILVFIFLRYPLTDY           
            210       220                   




125 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:59:26 2016 done: Mon Nov  7 02:59:26 2016
 Total Scan time:  1.370 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]