Result of FASTA (omim) for
pFN21AE1384
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1384, 598 aa
1>>>pF1KE1384 598 - 598 aa - 598 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.2602+/-0.000371; mu= -7.7214+/- 0.023
mean_var=349.6091+/-73.292, 0's: 0 Z-trim(123.5): 395 B-trim: 606 in 1/61
Lambda= 0.068593
statistics sampled from 42898 (43299) to 42898 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.508), width: 16
Scan time: 12.460
The best scores are: opt bits E(85289)
NP_775180 (OMIM: 139139) nuclear receptor subfamil ( 598) 4124 422.0 2.8e-117
NP_002126 (OMIM: 139139) nuclear receptor subfamil ( 598) 4124 422.0 2.8e-117
XP_006719426 (OMIM: 139139) PREDICTED: nuclear rec ( 598) 4124 422.0 2.8e-117
XP_006719427 (OMIM: 139139) PREDICTED: nuclear rec ( 598) 4124 422.0 2.8e-117
XP_005268881 (OMIM: 139139) PREDICTED: nuclear rec ( 598) 4124 422.0 2.8e-117
XP_016874736 (OMIM: 139139) PREDICTED: nuclear rec ( 602) 4124 422.0 2.8e-117
NP_001189162 (OMIM: 139139) nuclear receptor subfa ( 611) 4124 422.0 2.8e-117
NP_001189163 (OMIM: 139139) nuclear receptor subfa ( 652) 4124 422.0 3e-117
XP_005268879 (OMIM: 139139) PREDICTED: nuclear rec ( 670) 4124 422.0 3.1e-117
XP_016859708 (OMIM: 168600,601828) PREDICTED: nucl ( 598) 1922 204.1 1.1e-51
NP_006177 (OMIM: 168600,601828) nuclear receptor s ( 598) 1922 204.1 1.1e-51
XP_005246678 (OMIM: 168600,601828) PREDICTED: nucl ( 609) 1922 204.1 1.1e-51
XP_005246679 (OMIM: 168600,601828) PREDICTED: nucl ( 535) 1821 194.1 1e-48
XP_016870651 (OMIM: 600542,612237) PREDICTED: nucl ( 626) 1544 166.7 2.1e-40
NP_008912 (OMIM: 600542,612237) nuclear receptor s ( 626) 1544 166.7 2.1e-40
NP_775292 (OMIM: 600542,612237) nuclear receptor s ( 637) 1544 166.7 2.1e-40
XP_011509548 (OMIM: 168600,601828) PREDICTED: nucl ( 564) 1313 143.8 1.5e-33
XP_016859709 (OMIM: 168600,601828) PREDICTED: nucl ( 573) 1010 113.8 1.6e-24
XP_006712616 (OMIM: 168600,601828) PREDICTED: nucl ( 584) 1010 113.8 1.6e-24
NP_775291 (OMIM: 600542,612237) nuclear receptor s ( 443) 727 85.7 3.5e-16
NP_000957 (OMIM: 180190) retinoic acid receptor ga ( 454) 725 85.6 4.1e-16
NP_001230659 (OMIM: 180190) retinoic acid receptor ( 382) 720 85.0 5e-16
NP_001036193 (OMIM: 180190) retinoic acid receptor ( 443) 720 85.1 5.6e-16
NP_000956 (OMIM: 180220,615524) retinoic acid rece ( 448) 693 82.4 3.6e-15
NP_001277145 (OMIM: 180220,615524) retinoic acid r ( 455) 693 82.4 3.7e-15
NP_001277195 (OMIM: 180220,615524) retinoic acid r ( 399) 689 81.9 4.4e-15
NP_001277229 (OMIM: 180220,615524) retinoic acid r ( 405) 689 82.0 4.4e-15
NP_068811 (OMIM: 180246) retinoic acid receptor RX ( 533) 691 82.2 4.8e-15
NP_001278849 (OMIM: 180245) retinoic acid receptor ( 435) 678 80.9 9.9e-15
NP_002948 (OMIM: 180245) retinoic acid receptor RX ( 462) 678 80.9 1e-14
NP_001019980 (OMIM: 180240,612376) retinoic acid r ( 457) 677 80.8 1.1e-14
XP_011523398 (OMIM: 180240,612376) PREDICTED: reti ( 404) 674 80.5 1.2e-14
NP_001257330 (OMIM: 180246) retinoic acid receptor ( 537) 677 80.9 1.2e-14
XP_011523397 (OMIM: 180240,612376) PREDICTED: reti ( 462) 674 80.5 1.4e-14
NP_001138773 (OMIM: 180240,612376) retinoic acid r ( 462) 674 80.5 1.4e-14
XP_005257610 (OMIM: 180240,612376) PREDICTED: reti ( 462) 674 80.5 1.4e-14
NP_000955 (OMIM: 180240,612376) retinoic acid rece ( 462) 674 80.5 1.4e-14
XP_005257611 (OMIM: 180240,612376) PREDICTED: reti ( 462) 674 80.5 1.4e-14
XP_005257609 (OMIM: 180240,612376) PREDICTED: reti ( 478) 674 80.5 1.4e-14
NP_001278850 (OMIM: 180245) retinoic acid receptor ( 365) 657 78.8 3.7e-14
NP_005645 (OMIM: 132890,615722) COUP transcription ( 423) 644 77.5 1e-13
XP_016856127 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 635 76.6 1.9e-13
XP_016856129 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 635 76.6 1.9e-13
XP_016856138 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 635 76.6 1.9e-13
XP_016856130 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 635 76.6 1.9e-13
NP_001127757 (OMIM: 602969) estrogen-related recep ( 435) 635 76.6 1.9e-13
NP_001230438 (OMIM: 602969) estrogen-related recep ( 435) 635 76.6 1.9e-13
NP_996318 (OMIM: 602969) estrogen-related receptor ( 435) 635 76.6 1.9e-13
XP_016856131 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 635 76.6 1.9e-13
NP_001230443 (OMIM: 602969) estrogen-related recep ( 435) 635 76.6 1.9e-13
>>NP_775180 (OMIM: 139139) nuclear receptor subfamily 4 (598 aa)
initn: 4124 init1: 4124 opt: 4124 Z-score: 2226.5 bits: 422.0 E(85289): 2.8e-117
Smith-Waterman score: 4124; 100.0% identity (100.0% similar) in 598 aa overlap (1-598:1-598)
10 20 30 40 50 60
pF1KE1 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDAS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 PANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 PANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKW
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 AEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 AEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE1 DWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGLQEPRRVEELQNRIASCLKEHVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 DWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGLQEPRRVEELQNRIASCLKEHVA
490 500 510 520 530 540
550 560 570 580 590
pF1KE1 AVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKIFMDTLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 AVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKIFMDTLPF
550 560 570 580 590
>>NP_002126 (OMIM: 139139) nuclear receptor subfamily 4 (598 aa)
initn: 4124 init1: 4124 opt: 4124 Z-score: 2226.5 bits: 422.0 E(85289): 2.8e-117
Smith-Waterman score: 4124; 100.0% identity (100.0% similar) in 598 aa overlap (1-598:1-598)
10 20 30 40 50 60
pF1KE1 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDAS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 PANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKW
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 AEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE1 DWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGLQEPRRVEELQNRIASCLKEHVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGLQEPRRVEELQNRIASCLKEHVA
490 500 510 520 530 540
550 560 570 580 590
pF1KE1 AVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKIFMDTLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKIFMDTLPF
550 560 570 580 590
>>XP_006719426 (OMIM: 139139) PREDICTED: nuclear recepto (598 aa)
initn: 4124 init1: 4124 opt: 4124 Z-score: 2226.5 bits: 422.0 E(85289): 2.8e-117
Smith-Waterman score: 4124; 100.0% identity (100.0% similar) in 598 aa overlap (1-598:1-598)
10 20 30 40 50 60
pF1KE1 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDAS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 PANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKW
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 AEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE1 DWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGLQEPRRVEELQNRIASCLKEHVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGLQEPRRVEELQNRIASCLKEHVA
490 500 510 520 530 540
550 560 570 580 590
pF1KE1 AVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKIFMDTLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKIFMDTLPF
550 560 570 580 590
>>XP_006719427 (OMIM: 139139) PREDICTED: nuclear recepto (598 aa)
initn: 4124 init1: 4124 opt: 4124 Z-score: 2226.5 bits: 422.0 E(85289): 2.8e-117
Smith-Waterman score: 4124; 100.0% identity (100.0% similar) in 598 aa overlap (1-598:1-598)
10 20 30 40 50 60
pF1KE1 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDAS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 PANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKW
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 AEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE1 DWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGLQEPRRVEELQNRIASCLKEHVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGLQEPRRVEELQNRIASCLKEHVA
490 500 510 520 530 540
550 560 570 580 590
pF1KE1 AVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKIFMDTLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKIFMDTLPF
550 560 570 580 590
>>XP_005268881 (OMIM: 139139) PREDICTED: nuclear recepto (598 aa)
initn: 4124 init1: 4124 opt: 4124 Z-score: 2226.5 bits: 422.0 E(85289): 2.8e-117
Smith-Waterman score: 4124; 100.0% identity (100.0% similar) in 598 aa overlap (1-598:1-598)
10 20 30 40 50 60
pF1KE1 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDAS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 PANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKW
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 AEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE1 DWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGLQEPRRVEELQNRIASCLKEHVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGLQEPRRVEELQNRIASCLKEHVA
490 500 510 520 530 540
550 560 570 580 590
pF1KE1 AVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKIFMDTLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKIFMDTLPF
550 560 570 580 590
>>XP_016874736 (OMIM: 139139) PREDICTED: nuclear recepto (602 aa)
initn: 4124 init1: 4124 opt: 4124 Z-score: 2226.5 bits: 422.0 E(85289): 2.8e-117
Smith-Waterman score: 4124; 100.0% identity (100.0% similar) in 598 aa overlap (1-598:5-602)
10 20 30 40 50
pF1KE1 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQEEMPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 MDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 SGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 LPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 SPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQ
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE1 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQP
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE1 PDASPANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDASPANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEV
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE1 IRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCA
430 440 450 460 470 480
480 490 500 510 520 530
pF1KE1 RGFGDWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGLQEPRRVEELQNRIASCLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RGFGDWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGLQEPRRVEELQNRIASCLK
490 500 510 520 530 540
540 550 560 570 580 590
pF1KE1 EHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKIFMDTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKIFMDTL
550 560 570 580 590 600
pF1KE1 PF
::
XP_016 PF
>>NP_001189162 (OMIM: 139139) nuclear receptor subfamily (611 aa)
initn: 4124 init1: 4124 opt: 4124 Z-score: 2226.4 bits: 422.0 E(85289): 2.8e-117
Smith-Waterman score: 4124; 100.0% identity (100.0% similar) in 598 aa overlap (1-598:14-611)
10 20 30 40
pF1KE1 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAP
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MWLAKACWSIQSEMPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE1 TALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQ
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE1 VYGCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VYGCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTY
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE1 EGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMP
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE1 TAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGC
250 260 270 280 290 300
290 300 310 320 330 340
pF1KE1 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG
310 320 330 340 350 360
350 360 370 380 390 400
pF1KE1 RLPSKPKQPPDASPANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLPSKPKQPPDASPANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFY
370 380 390 400 410 420
410 420 430 440 450 460
pF1KE1 DLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSG
430 440 450 460 470 480
470 480 490 500 510 520
pF1KE1 LVLHRLQCARGFGDWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGLQEPRRVEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVLHRLQCARGFGDWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGLQEPRRVEEL
490 500 510 520 530 540
530 540 550 560 570 580
pF1KE1 QNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPI
550 560 570 580 590 600
590
pF1KE1 IDKIFMDTLPF
:::::::::::
NP_001 IDKIFMDTLPF
610
>>NP_001189163 (OMIM: 139139) nuclear receptor subfamily (652 aa)
initn: 4124 init1: 4124 opt: 4124 Z-score: 2226.0 bits: 422.0 E(85289): 3e-117
Smith-Waterman score: 4124; 100.0% identity (100.0% similar) in 598 aa overlap (1-598:55-652)
10 20 30
pF1KE1 MPCIQAQYGTPAPSPGPRDHLASDPLTPEF
::::::::::::::::::::::::::::::
NP_001 PPRQPGSFCWALKADGIMWLAKACWSIQSEMPCIQAQYGTPAPSPGPRDHLASDPLTPEF
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE1 IKPTMDLASPEAAPAAPTALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKPTMDLASPEAAPAAPTALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSS
90 100 110 120 130 140
100 110 120 130 140 150
pF1KE1 SSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQ
150 160 170 180 190 200
160 170 180 190 200 210
pF1KE1 LSPWDGSFGHFSPSQTYEGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSPWDGSFGHFSPSQTYEGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLF
210 220 230 240 250 260
220 230 240 250 260 270
pF1KE1 PSQATHQLGEGESYSMPTAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSQATHQLGEGESYSMPTAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVC
270 280 290 300 310 320
280 290 300 310 320 330
pF1KE1 GDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAV
330 340 350 360 370 380
340 350 360 370 380 390
pF1KE1 GMVKEVVRTDSLKGRRGRLPSKPKQPPDASPANLLTSLVRAHLDSGPSTAKLDYSKFQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMVKEVVRTDSLKGRRGRLPSKPKQPPDASPANLLTSLVRAHLDSGPSTAKLDYSKFQEL
390 400 410 420 430 440
400 410 420 430 440 450
pF1KE1 VLPHFGKEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLPHFGKEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILR
450 460 470 480 490 500
460 470 480 490 500 510
pF1KE1 LAYRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLLVDVPAFACLSALV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAYRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLLVDVPAFACLSALV
510 520 530 540 550 560
520 530 540 550 560 570
pF1KE1 LITDRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LITDRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGL
570 580 590 600 610 620
580 590
pF1KE1 QRIFYLKLEDLVPPPPIIDKIFMDTLPF
::::::::::::::::::::::::::::
NP_001 QRIFYLKLEDLVPPPPIIDKIFMDTLPF
630 640 650
>>XP_005268879 (OMIM: 139139) PREDICTED: nuclear recepto (670 aa)
initn: 4124 init1: 4124 opt: 4124 Z-score: 2225.8 bits: 422.0 E(85289): 3.1e-117
Smith-Waterman score: 4124; 100.0% identity (100.0% similar) in 598 aa overlap (1-598:73-670)
10 20 30
pF1KE1 MPCIQAQYGTPAPSPGPRDHLASDPLTPEF
::::::::::::::::::::::::::::::
XP_005 PPRQPGSFCWALKADGIMWLAKACWSIQSEMPCIQAQYGTPAPSPGPRDHLASDPLTPEF
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE1 IKPTMDLASPEAAPAAPTALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IKPTMDLASPEAAPAAPTALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSS
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE1 SSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQ
170 180 190 200 210 220
160 170 180 190 200 210
pF1KE1 LSPWDGSFGHFSPSQTYEGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSPWDGSFGHFSPSQTYEGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLF
230 240 250 260 270 280
220 230 240 250 260 270
pF1KE1 PSQATHQLGEGESYSMPTAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PSQATHQLGEGESYSMPTAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVC
290 300 310 320 330 340
280 290 300 310 320 330
pF1KE1 GDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAV
350 360 370 380 390 400
340 350 360 370 380 390
pF1KE1 GMVKEVVRTDSLKGRRGRLPSKPKQPPDASPANLLTSLVRAHLDSGPSTAKLDYSKFQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GMVKEVVRTDSLKGRRGRLPSKPKQPPDASPANLLTSLVRAHLDSGPSTAKLDYSKFQEL
410 420 430 440 450 460
400 410 420 430 440 450
pF1KE1 VLPHFGKEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VLPHFGKEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILR
470 480 490 500 510 520
460 470 480 490 500 510
pF1KE1 LAYRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLLVDVPAFACLSALV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LAYRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLLVDVPAFACLSALV
530 540 550 560 570 580
520 530 540 550 560 570
pF1KE1 LITDRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LITDRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGL
590 600 610 620 630 640
580 590
pF1KE1 QRIFYLKLEDLVPPPPIIDKIFMDTLPF
::::::::::::::::::::::::::::
XP_005 QRIFYLKLEDLVPPPPIIDKIFMDTLPF
650 660 670
>>XP_016859708 (OMIM: 168600,601828) PREDICTED: nuclear (598 aa)
initn: 1349 init1: 1124 opt: 1922 Z-score: 1048.8 bits: 204.1 E(85289): 1.1e-51
Smith-Waterman score: 2117; 55.2% identity (75.2% similar) in 632 aa overlap (1-598:1-598)
10 20 30 40 50
pF1KE1 MPCIQAQYGT-P-APSPGPRDH-------LASDPLTPEFIKPTMDLASPEAAPAAPTALP
:::.:::::. : . ::. ... .:: :::::.: .:::.. : . : :.::
XP_016 MPCVQAQYGSSPQGASPASQSYSYHSSGEYSSDFLTPEFVKFSMDLTNTEIT--ATTSLP
10 20 30 40 50
60 70 80 90 100
pF1KE1 SFSTFMDGYTGEFDT---FLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQV
:::::::.:. .:. :::.: . : ..:.: ::.:.
XP_016 SFSTFMDNYSTGYDVKPPCLYQMPLSGQ---------------------QSSIKVEDIQM
60 70 80 90
110 120 130 140 150 160
pF1KE1 YGCYPGPLSGP-VDEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSP-WD--GSFGHFSPS
.. : .: . ::: :: .: : :.:.::.:: : :: :: ::. .:
XP_016 HNYQQHSHLPPQSEEMMPHSGSVYY-KPSSPPTPTTPGFQV-QHSPMWDDPGSLHNFH--
100 110 120 130 140 150
170 180 190 200 210
pF1KE1 QTYEGLRAWTEQLPKASGPPQPPAFFSF--SPPTGPSPSLAQ---SPLK--LFPSQA-TH
:.: : :... . . : . ..::: ::: : : . .::. . : : .:
XP_016 QNYV---ATTHMIEQRKTPVSRLSLFSFKQSPPGTPVSSCQMRFDGPLHVPMNPEPAGSH
160 170 180 190 200 210
220 230 240 250 260 270
pF1KE1 QLGEGESYSMPTAFPGLAPTS---PHLE---GSGILDTPVTSTKARSGAPGGSEGRCAVC
.. .:.....:. : :.: : :. .: .::: : : .: :.:. .:: ::::
XP_016 HVVDGQTFAVPN--PIRKPASMGFPGLQIGHASQLLDTQVPSPPSR-GSPS-NEGLCAVC
220 230 240 250 260
280 290 300 310 320 330
pF1KE1 GDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAV
::::.::::::::::::::::::::::::::.:::::.::::::::::::.:::::::::
XP_016 GDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAV
270 280 290 300 310 320
340 350 360 370 380
pF1KE1 GMVKEVVRTDSLKGRRGRLPSKPKQP----PDASPANLLTSLVRAHLDSGPSTAKLDYSK
::::::::::::::::::::::::.: : . :..:...:::::.::.:. ..::::.
XP_016 GMVKEVVRTDSLKGRRGRLPSKPKSPQEPSPPSPPVSLISALVRAHVDSNPAMTSLDYSR
330 340 350 360 370 380
390 400 410 420 430 440
pF1KE1 FQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLEL
:: ... .:. .:::::::.::.:.:: :::::::::.: ::::::.:::::::
XP_016 FQANPDYQMSGDDTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLEL
390 400 410 420 430 440
450 460 470 480 490 500
pF1KE1 FILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLLVDVPAFACL
:.:::::::.: :::::::.:.:::::::.::::.:::::. :: .:... .:. ::.:.
XP_016 FVLRLAYRSNPVEGKLIFCNGVVLHRLQCVRGFGEWIDSIVEFSSNLQNMNIDISAFSCI
450 460 470 480 490 500
510 520 530 540 550 560
pF1KE1 SALVLITDRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLC
.::...:.::::.::.:::::::.:..:::.::. : . . ::.::::::::::::
XP_016 AALAMVTERHGLKEPKRVEELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGKLPELRTLC
510 520 530 540 550 560
570 580 590
pF1KE1 TQGLQRIFYLKLEDLVPPPPIIDKIFMDTLPF
::::::::::::::::::: ::::.:.:::::
XP_016 TQGLQRIFYLKLEDLVPPPAIIDKLFLDTLPF
570 580 590
598 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:13:51 2016 done: Mon Nov 7 01:13:53 2016
Total Scan time: 12.460 Total Display time: 0.170
Function used was FASTA [36.3.4 Apr, 2011]