Result of FASTA (ccds) for
pFN21AE1381
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1381, 783 aa
1>>>pF1KE1381 783 - 783 aa - 783 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.0497+/-0.000862; mu= -0.4705+/- 0.052
mean_var=236.2557+/-47.946, 0's: 0 Z-trim(114.9): 13 B-trim: 229 in 1/51
Lambda= 0.083442
statistics sampled from 15416 (15423) to 15416 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.474), width: 16
Scan time: 5.380
The best scores are: opt bits E(32554)
CCDS31614.1 RIN1 gene_id:9610|Hs108|chr11 ( 783) 5234 643.2 4.7e-184
CCDS56182.1 RIN2 gene_id:54453|Hs108|chr20 ( 944) 715 99.2 3.2e-20
>>CCDS31614.1 RIN1 gene_id:9610|Hs108|chr11 (783 aa)
initn: 5234 init1: 5234 opt: 5234 Z-score: 3417.8 bits: 643.2 E(32554): 4.7e-184
Smith-Waterman score: 5234; 100.0% identity (100.0% similar) in 783 aa overlap (1-783:1-783)
10 20 30 40 50 60
pF1KE1 MESPGESGAGSPGAPSPSSFTTGHLAREKPAQDPLYDVPNASGGQAGGPQRPGRVVSLRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MESPGESGAGSPGAPSPSSFTTGHLAREKPAQDPLYDVPNASGGQAGGPQRPGRVVSLRE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 RLLLTRPVWLQLQANAAAALHMLRTEPPGTFLVRKSNTRQCQALCMRLPEASGPSFVSSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RLLLTRPVWLQLQANAAAALHMLRTEPPGTFLVRKSNTRQCQALCMRLPEASGPSFVSSH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 YILESPGGVSLEGSELMFPDLVQLICAYCHTRDILLLPLQLPRAIHHAATHKELEAISHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YILESPGGVSLEGSELMFPDLVQLICAYCHTRDILLLPLQLPRAIHHAATHKELEAISHL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 GIEFWSSSLNIKAQRGPAGGPVLPQLKARSPQELDQGTGAALCFFNPLFPGDLGPTKREK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GIEFWSSSLNIKAQRGPAGGPVLPQLKARSPQELDQGTGAALCFFNPLFPGDLGPTKREK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 FKRSFKVRVSTETSSPLSPPAVPPPPVPVLPGAVPSQTERLPPCQLLRRESSVGYRVPAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FKRSFKVRVSTETSSPLSPPAVPPPPVPVLPGAVPSQTERLPPCQLLRRESSVGYRVPAG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 SGPSLPPMPSLQEVDCGSPSSSEEEGVPGSRGSPATSPHLGRRRPLLRSMSAAFCSLLAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SGPSLPPMPSLQEVDCGSPSSSEEEGVPGSRGSPATSPHLGRRRPLLRSMSAAFCSLLAP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 ERQVGRAAAALMQDRHTAAGQLVQDLLTQVRAGPEPQELQGIRQALSRARAMLSAELGPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ERQVGRAAAALMQDRHTAAGQLVQDLLTQVRAGPEPQELQGIRQALSRARAMLSAELGPE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 KLLSPKRLEHVLEKSLHCSVLKPLRPILAARLRRRLAADGSLGRLAEGLRLARAQGPGAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KLLSPKRLEHVLEKSLHCSVLKPLRPILAARLRRRLAADGSLGRLAEGLRLARAQGPGAF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE1 GSHLSLPSPVELEQVRQKLLQLLRTYSPSAQVKRLLQACKLLYMALRTQEGEGAGADEFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GSHLSLPSPVELEQVRQKLLQLLRTYSPSAQVKRLLQACKLLYMALRTQEGEGAGADEFL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE1 PLLSLVLAHCDLPELLLEAEYMSELLEPSLLTGEGGYYLTSLSASLALLSGLGQAHTLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PLLSLVLAHCDLPELLLEAEYMSELLEPSLLTGEGGYYLTSLSASLALLSGLGQAHTLPL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE1 SPVQELRRSLSLWEQRRLPATHCFQHLLRVAYQDPSSGCTSKTLAVPPEASIATLNQLCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SPVQELRRSLSLWEQRRLPATHCFQHLLRVAYQDPSSGCTSKTLAVPPEASIATLNQLCA
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE1 TKFRVTQPNTFGLFLYKEQGYHRLPPGALAHRLPTTGYLVYRRAEWPETQGAVTEEEGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TKFRVTQPNTFGLFLYKEQGYHRLPPGALAHRLPTTGYLVYRRAEWPETQGAVTEEEGSG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE1 QSEARSRGEEQGCQGDGDAGVKASPRDIREQSETTAEGGQGQAQEGPAQPGEPEAEGSRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QSEARSRGEEQGCQGDGDAGVKASPRDIREQSETTAEGGQGQAQEGPAQPGEPEAEGSRA
730 740 750 760 770 780
pF1KE1 AEE
:::
CCDS31 AEE
>>CCDS56182.1 RIN2 gene_id:54453|Hs108|chr20 (944 aa)
initn: 1094 init1: 460 opt: 715 Z-score: 476.5 bits: 99.2 E(32554): 3.2e-20
Smith-Waterman score: 985; 31.8% identity (54.9% similar) in 758 aa overlap (100-703:177-924)
70 80 90 100 110 120
pF1KE1 LQLQANAAAALHMLRTEPPGTFLVRKSNTRQCQALCMRLPEASGPSFVSSHYILESPGGV
: ..: .::: : . . : ::
CCDS56 LQLSLSEEEAAEVLQAQPPGIFLVHKSTKMQKKVLSLRLPCEFGAPL-KEFAIKESTYTF
150 160 170 180 190 200
130 140 150 160 170 180
pF1KE1 SLEGSELMFPDLVQLICAYCHTRDILLLPLQLPRAIHHAATHKELEAISHLGIEFWSSSL
::::: . : :: .:: :: .::.: . :.:: :: : .. .:: ....:..::::
CCDS56 SLEGSGISFADLFRLIAFYCISRDVLPFTLKLPYAISTAKSEAQLEELAQMGLNFWSSPA
210 220 230 240 250 260
190 200 210 220
pF1KE1 NIKAQRGP------AGGPVLP----QL---------KARSPQELD-QGTGAALCFFNPLF
. : : .. : : :: :.:.:.::. . :..::::.::::
CCDS56 DSKPPNLPPPHRPLSSDGVCPASLRQLCLINGVHSIKTRTPSELECSQTNGALCFINPLF
270 280 290 300 310 320
230 240 250 260
pF1KE1 ----PGDL-GPTKREKFKRSFKVRVSTETSSPLSPPAVPPPPV------P----------
:: : :: . :. .. . .: :: :: ::: . :
CCDS56 LKVHSQDLSGGLKRPS-TRTPNANGTERTRSP--PPRPPPPAINSLHTSPRLARTETQTS
330 340 350 360 370 380
270 280 290 300 310
pF1KE1 -------------VLPGAVPSQTERLPPCQLLRRESSV----GYRVPAGSGPSLPPMPSL
.:::. :. .:: .: .. : . : .. .:. :. : :
CCDS56 MPETVNHNKHGNVALPGTKPTP---IPPPRLKKQASFLEAEGGAKTLSGGRPGAG--PEL
390 400 410 420 430
320 330 340
pF1KE1 QEVDCGSPSSSEEEGVPG--SRGSPATS---P--HLGRRR--------------------
. :::... :..:: .:. : .: : : ::.:
CCDS56 ELGTAGSPGGAPPEAAPGDCTRAPPPSSESRPPCHGGRQRLSDMSISTSSSDSLEFDRSM
440 450 460 470 480 490
350
pF1KE1 PL----------------------------------------------LRSMSAAFCSLL
:: :...:..: :..
CCDS56 PLFGYEADTNSSLEDYEGESDQETMAPPIKSKKKRSSSFVLPKLVKSQLQKVSGVFSSFM
500 510 520 530 540 550
360 370 380 390 400 410
pF1KE1 APERQVGRAAAALMQDRHTAAGQLVQDLLTQVRAGPE-----PQELQGIRQALSRARAML
.::... : : : .:. : : :::: .. .. . : . :: ::: ..... .:
CCDS56 TPEKRMVRRIAELSRDKCTYFGCLVQDYVSFLQENKECHVSSTDMLQTIRQFMTQVKNYL
560 570 580 590 600 610
420 430 440 450 460
pF1KE1 S--AELGP--EKLLSPKRLEHVLEKSLHCSVLKPLRPILAARLRRRLAADGSLGRLAEGL
: .:: : :.:. ... ::::..: .::::. . : :. :::: .: :.:
CCDS56 SQSSELDPPIESLIPEDQIDVVLEKAMHKCILKPLKGHVEAMLKDFHMADGSWKQLKENL
620 630 640 650 660 670
470 480 490 500 510 520
pF1KE1 RLARAQGPGAFGSHLSLPSPVELEQVRQKLLQLLRTYSPSAQVKRLLQACKLLYMALRTQ
.:.: ..: .: :. :..:... :.. . . ::: .: ::..:::.: .....
CCDS56 QLVRQRNPQELGVFAPTPDFVDVEKIKVKFMTMQKMYSPEKKVMLLLRVCKLIYTVMENN
680 690 700 710 720 730
530 540 550 560 570 580
pF1KE1 EGEGAGADEFLPLLSLVLAHCDLPELLLEAEYMSELLEPSLLTGEGGYYLTSLSASLALL
:. :::.:::.:. :.:.::. :: : ::: :::.:::: ::::::::: ..:.:.
CCDS56 SGRMYGADDFLPVLTYVIAQCDMLELDTEIEYMMELLDPSLLHGEGGYYLTSAYGALSLI
740 750 760 770 780 790
590 600 610 620 630 640
pF1KE1 SGLGQAHTLPLSPVQELRRSLSLWEQRR-----LPATHCFQHLLRVAYQDPSSGCTSKTL
... . .. : .: : .: :..:: .:.. ::. ::::.:. .::::.:::
CCDS56 KNFQEEQAARLLS-SETRDTLRQWHKRRTTNRTIPSVDDFQNYLRVAFQEVNSGCTGKTL
800 810 820 830 840 850
650 660 670 680 690
pF1KE1 AVPPEASIATLNQLCATKFRVTQPNTFGLFLYKEQGYHRLPPGALAHRL---------PT
: : . . :.:: ::.: .:. ..:::. .. ...: . ... :
CCDS56 LVRPYITTEDVCQICAEKFKVGDPEEYSLFLFVDETWQQLAEDTYPQKIKAELHSRPQPH
860 870 880 890 900 910
700 710 720 730 740 750
pF1KE1 TGYLVYRRAEWPETQGAVTEEEGSGQSEARSRGEEQGCQGDGDAGVKASPRDIREQSETT
..::.:
CCDS56 IFHFVYKRIKNDPYGIIFQNGEEDLTTS
920 930 940
783 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:25:39 2016 done: Mon Nov 7 01:25:40 2016
Total Scan time: 5.380 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]