Result of FASTA (omim) for
pFN21AE1379
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1379, 253 aa
1>>>pF1KE1379 253 - 253 aa - 253 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7422+/-0.000378; mu= 17.7398+/- 0.023
mean_var=64.4239+/-12.819, 0's: 0 Z-trim(112.3): 96 B-trim: 885 in 1/48
Lambda= 0.159790
statistics sampled from 21019 (21119) to 21019 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.609), E-opt: 0.2 (0.248), width: 16
Scan time: 6.260
The best scores are: opt bits E(85289)
NP_620598 (OMIM: 179620,602243,609057) CD151 antig ( 253) 1709 402.6 3.4e-112
NP_004348 (OMIM: 179620,602243,609057) CD151 antig ( 253) 1709 402.6 3.4e-112
NP_001034579 (OMIM: 179620,602243,609057) CD151 an ( 253) 1709 402.6 3.4e-112
NP_620599 (OMIM: 179620,602243,609057) CD151 antig ( 253) 1709 402.6 3.4e-112
NP_005715 (OMIM: 613134) tetraspanin-3 isoform 1 [ ( 253) 460 114.7 1.6e-25
NP_004606 (OMIM: 300096,300210) tetraspanin-7 [Hom ( 249) 448 111.9 1.1e-24
NP_001020405 (OMIM: 602644) tetraspanin-4 isoform ( 238) 416 104.6 1.7e-22
NP_001020407 (OMIM: 602644) tetraspanin-4 isoform ( 238) 416 104.6 1.7e-22
NP_003262 (OMIM: 602644) tetraspanin-4 isoform a [ ( 238) 416 104.6 1.7e-22
XP_005253159 (OMIM: 602644) PREDICTED: tetraspanin ( 238) 416 104.6 1.7e-22
NP_001020409 (OMIM: 602644) tetraspanin-4 isoform ( 238) 416 104.6 1.7e-22
NP_001020406 (OMIM: 602644) tetraspanin-4 isoform ( 238) 416 104.6 1.7e-22
NP_001020408 (OMIM: 602644) tetraspanin-4 isoform ( 238) 416 104.6 1.7e-22
NP_006666 (OMIM: 613137) tetraspanin-9 [Homo sapie ( 239) 416 104.6 1.7e-22
NP_001161792 (OMIM: 613137) tetraspanin-9 [Homo sa ( 239) 416 104.6 1.7e-22
NP_003261 (OMIM: 300191) tetraspanin-6 isoform a [ ( 245) 398 100.4 3.1e-21
XP_016877346 (OMIM: 613134) PREDICTED: tetraspanin ( 214) 379 96.0 5.9e-20
XP_006719646 (OMIM: 600769) PREDICTED: tetraspanin ( 237) 361 91.9 1.1e-18
XP_016875402 (OMIM: 600769) PREDICTED: tetraspanin ( 237) 361 91.9 1.1e-18
NP_004607 (OMIM: 600769) tetraspanin-8 [Homo sapie ( 237) 361 91.9 1.1e-18
NP_001035122 (OMIM: 151525) leukocyte surface anti ( 219) 355 90.5 2.8e-18
NP_000551 (OMIM: 151525) leukocyte surface antigen ( 219) 355 90.5 2.8e-18
XP_011518638 (OMIM: 602644) PREDICTED: tetraspanin ( 269) 354 90.3 3.8e-18
NP_001760 (OMIM: 143030) CD9 antigen isoform 1 [Ho ( 228) 349 89.1 7.5e-18
NP_036471 (OMIM: 613140) tetraspanin-15 [Homo sapi ( 294) 342 87.6 2.8e-17
NP_002222 (OMIM: 176807,600623) CD82 antigen isofo ( 267) 339 86.8 4.2e-17
XP_006718286 (OMIM: 176807,600623) PREDICTED: CD82 ( 267) 339 86.8 4.2e-17
XP_005253871 (OMIM: 143030) PREDICTED: CD9 antigen ( 249) 332 85.2 1.2e-16
NP_001765 (OMIM: 151523) leukocyte antigen CD37 is ( 281) 329 84.6 2.1e-16
XP_005259492 (OMIM: 151523) PREDICTED: leukocyte a ( 365) 329 84.6 2.6e-16
NP_001161884 (OMIM: 613134) tetraspanin-3 isoform ( 189) 317 81.6 1.1e-15
NP_005718 (OMIM: 613170) tetraspanin-1 [Homo sapie ( 241) 318 82.0 1.1e-15
XP_011538762 (OMIM: 613170) PREDICTED: tetraspanin ( 258) 302 78.3 1.5e-14
NP_005714 (OMIM: 613136) tetraspanin-5 [Homo sapie ( 268) 298 77.4 2.9e-14
NP_848657 (OMIM: 610120) tetraspanin-33 [Homo sapi ( 283) 291 75.8 9.3e-14
XP_006716023 (OMIM: 610120) PREDICTED: tetraspanin ( 282) 290 75.6 1.1e-13
NP_004347 (OMIM: 186845,613496) CD81 antigen isofo ( 236) 286 74.6 1.8e-13
NP_001244319 (OMIM: 155740) CD63 antigen isoform A ( 238) 283 73.9 2.9e-13
NP_001771 (OMIM: 155740) CD63 antigen isoform A [H ( 238) 283 73.9 2.9e-13
NP_001244320 (OMIM: 155740) CD63 antigen isoform A ( 238) 283 73.9 2.9e-13
NP_001244318 (OMIM: 155740) CD63 antigen isoform A ( 238) 283 73.9 2.9e-13
NP_001254627 (OMIM: 155740) CD63 antigen isoform A ( 238) 283 73.9 2.9e-13
NP_001295245 (OMIM: 613133) tetraspanin-2 isoform ( 193) 282 73.6 2.9e-13
NP_001244321 (OMIM: 155740) CD63 antigen isoform C ( 215) 282 73.6 3.2e-13
NP_005716 (OMIM: 613133) tetraspanin-2 isoform 1 [ ( 221) 282 73.6 3.2e-13
NP_001244329 (OMIM: 155740) CD63 antigen isoform D ( 156) 280 73.1 3.4e-13
NP_001244330 (OMIM: 155740) CD63 antigen isoform D ( 156) 280 73.1 3.4e-13
XP_011519215 (OMIM: 613137) PREDICTED: tetraspanin ( 175) 260 68.5 9.2e-12
XP_011519214 (OMIM: 613137) PREDICTED: tetraspanin ( 175) 260 68.5 9.2e-12
XP_011518640 (OMIM: 602644) PREDICTED: tetraspanin ( 174) 257 67.8 1.5e-11
>>NP_620598 (OMIM: 179620,602243,609057) CD151 antigen [ (253 aa)
initn: 1709 init1: 1709 opt: 1709 Z-score: 2135.3 bits: 402.6 E(85289): 3.4e-112
Smith-Waterman score: 1709; 100.0% identity (100.0% similar) in 253 aa overlap (1-253:1-253)
10 20 30 40 50 60
pF1KE1 MGEFNEKKTTCGTVCLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 MGEFNEKKTTCGTVCLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLAT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AYILVVAGTVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 AYILVVAGTVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ELKENLKDTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 ELKENLKDTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 PDSCCKTVVALCGQRDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 PDSCCKTVVALCGQRDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIF
190 200 210 220 230 240
250
pF1KE1 TCCLYRSLKLEHY
:::::::::::::
NP_620 TCCLYRSLKLEHY
250
>>NP_004348 (OMIM: 179620,602243,609057) CD151 antigen [ (253 aa)
initn: 1709 init1: 1709 opt: 1709 Z-score: 2135.3 bits: 402.6 E(85289): 3.4e-112
Smith-Waterman score: 1709; 100.0% identity (100.0% similar) in 253 aa overlap (1-253:1-253)
10 20 30 40 50 60
pF1KE1 MGEFNEKKTTCGTVCLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MGEFNEKKTTCGTVCLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLAT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AYILVVAGTVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 AYILVVAGTVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ELKENLKDTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ELKENLKDTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 PDSCCKTVVALCGQRDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PDSCCKTVVALCGQRDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIF
190 200 210 220 230 240
250
pF1KE1 TCCLYRSLKLEHY
:::::::::::::
NP_004 TCCLYRSLKLEHY
250
>>NP_001034579 (OMIM: 179620,602243,609057) CD151 antige (253 aa)
initn: 1709 init1: 1709 opt: 1709 Z-score: 2135.3 bits: 402.6 E(85289): 3.4e-112
Smith-Waterman score: 1709; 100.0% identity (100.0% similar) in 253 aa overlap (1-253:1-253)
10 20 30 40 50 60
pF1KE1 MGEFNEKKTTCGTVCLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGEFNEKKTTCGTVCLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLAT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AYILVVAGTVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AYILVVAGTVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ELKENLKDTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELKENLKDTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 PDSCCKTVVALCGQRDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDSCCKTVVALCGQRDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIF
190 200 210 220 230 240
250
pF1KE1 TCCLYRSLKLEHY
:::::::::::::
NP_001 TCCLYRSLKLEHY
250
>>NP_620599 (OMIM: 179620,602243,609057) CD151 antigen [ (253 aa)
initn: 1709 init1: 1709 opt: 1709 Z-score: 2135.3 bits: 402.6 E(85289): 3.4e-112
Smith-Waterman score: 1709; 100.0% identity (100.0% similar) in 253 aa overlap (1-253:1-253)
10 20 30 40 50 60
pF1KE1 MGEFNEKKTTCGTVCLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 MGEFNEKKTTCGTVCLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLAT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AYILVVAGTVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 AYILVVAGTVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ELKENLKDTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 ELKENLKDTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 PDSCCKTVVALCGQRDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 PDSCCKTVVALCGQRDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIF
190 200 210 220 230 240
250
pF1KE1 TCCLYRSLKLEHY
:::::::::::::
NP_620 TCCLYRSLKLEHY
250
>>NP_005715 (OMIM: 613134) tetraspanin-3 isoform 1 [Homo (253 aa)
initn: 358 init1: 233 opt: 460 Z-score: 579.2 bits: 114.7 E(85289): 1.6e-25
Smith-Waterman score: 460; 29.2% identity (68.2% similar) in 233 aa overlap (11-242:4-231)
10 20 30 40 50 60
pF1KE1 MGEFNEKKTTCGTVCLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLAT
:: . : .: : :: :. . :: ... .:: .. . :
NP_005 MGQCGITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLIP
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 AYILVVAGTVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNT
: .....:..... :..:::::..: : : . :.::..:. :... .:.:.: ....
NP_005 AVVIIAVGALLFIIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVEN
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 ELKENLKDTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVV
:. .... .. : :. . .:.. :.: .:...:::: .: .::....:.. :. .. :
NP_005 EVDRSIQKVY-KTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFK--ETKNQSV
120 130 140 150 160 170
190 200 210 220 230
pF1KE1 PDSCCKTVVALC-GQRDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMI
: :::. ... : :. : :..: .:: : . . .:: . . .....: .:..::.
NP_005 PLSCCRETASNCNGSLAHPSDLY-AEG-CEALVVKKLQEIMMHVIWAALAFAAIQLLGML
180 190 200 210 220
240 250
pF1KE1 FTCCLYRSLKLEHY
.:
NP_005 CACIVLCRRSRDPAYELLITGGTYA
230 240 250
>>NP_004606 (OMIM: 300096,300210) tetraspanin-7 [Homo sa (249 aa)
initn: 475 init1: 138 opt: 448 Z-score: 564.3 bits: 111.9 E(85289): 1.1e-24
Smith-Waterman score: 482; 32.9% identity (66.3% similar) in 243 aa overlap (15-253:14-246)
10 20 30 40 50 60
pF1KE1 MGEFNEKKTTCGTVCLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLAT
::: ::. :. ::..:. ..:::.: . ::::.: .. :
NP_004 MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAP
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 AYILVVAGTVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNT
:.:. .::...: :..:: :: . .:.:: ..: ..:: :..::: .... ....
NP_004 -YVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKD
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 ELKENLKDTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVV
. .. :.: . :. :.. . :::..:. . ::: .: .: : .. : : .
NP_004 TFLRTYTDAM-QTYN--GNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYF--LEHG---I
120 130 140 150 160 170
190 200 210 220 230
pF1KE1 PDSCCKTVVALCGQRD-HASNIY--KV-EGGCITKLETFIQEHLRVIGAVGIGIACVQVF
: ::: . . :. .: : .. :: . :: . .:.. .. .:..:..::: :..
NP_004 PPSCCMNETD-CNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLI
180 190 200 210 220
240 250
pF1KE1 GMIFTCCLYRSLKLEHY
::...::: : . ..:
NP_004 GMLLACCLSRFITANQYEMV
230 240
>>NP_001020405 (OMIM: 602644) tetraspanin-4 isoform a [H (238 aa)
initn: 419 init1: 305 opt: 416 Z-score: 524.7 bits: 104.6 E(85289): 1.7e-22
Smith-Waterman score: 492; 34.2% identity (64.5% similar) in 234 aa overlap (15-245:5-227)
10 20 30 40 50
pF1KE1 MGEFNEKKTTCGTVCL---KYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTY
:: :::.:..: :::.: .:..:::: : .... .: .:
NP_001 MARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATLSSSFPS
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 LATAYILVVAGTVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQ
:..: .:...:. ::. : .:: ...:: . :: .:.:::..:::: .:: .:: ..
NP_001 LSAANLLIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 LNTELKENLKDTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGG
.. ...:: . . : :. ..:.: . .: .:.::: .: :: . ..
NP_001 IDRYAQQDLKKGL-HLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFEVY-------NA
120 130 140 150 160
180 190 200 210 220 230
pF1KE1 RVVPDSCCKTVVALCGQRDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFG
:::::: :: :: . . .. : .....::.: ..: :. : ::..:
NP_001 TRVPDSCCLEFSESCGL--HAPGTWW-KAPCYETVKVWLQENLLAVGIFGLCTALVQILG
170 180 190 200 210
240 250
pF1KE1 MIFTCCLYRSLKLEHY
. :. .:
NP_001 LTFAMTMYCQVVKADTYCA
220 230
>>NP_001020407 (OMIM: 602644) tetraspanin-4 isoform a [H (238 aa)
initn: 419 init1: 305 opt: 416 Z-score: 524.7 bits: 104.6 E(85289): 1.7e-22
Smith-Waterman score: 492; 34.2% identity (64.5% similar) in 234 aa overlap (15-245:5-227)
10 20 30 40 50
pF1KE1 MGEFNEKKTTCGTVCL---KYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTY
:: :::.:..: :::.: .:..:::: : .... .: .:
NP_001 MARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATLSSSFPS
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 LATAYILVVAGTVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQ
:..: .:...:. ::. : .:: ...:: . :: .:.:::..:::: .:: .:: ..
NP_001 LSAANLLIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 LNTELKENLKDTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGG
.. ...:: . . : :. ..:.: . .: .:.::: .: :: . ..
NP_001 IDRYAQQDLKKGL-HLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFEVY-------NA
120 130 140 150 160
180 190 200 210 220 230
pF1KE1 RVVPDSCCKTVVALCGQRDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFG
:::::: :: :: . . .. : .....::.: ..: :. : ::..:
NP_001 TRVPDSCCLEFSESCGL--HAPGTWW-KAPCYETVKVWLQENLLAVGIFGLCTALVQILG
170 180 190 200 210
240 250
pF1KE1 MIFTCCLYRSLKLEHY
. :. .:
NP_001 LTFAMTMYCQVVKADTYCA
220 230
>>NP_003262 (OMIM: 602644) tetraspanin-4 isoform a [Homo (238 aa)
initn: 419 init1: 305 opt: 416 Z-score: 524.7 bits: 104.6 E(85289): 1.7e-22
Smith-Waterman score: 492; 34.2% identity (64.5% similar) in 234 aa overlap (15-245:5-227)
10 20 30 40 50
pF1KE1 MGEFNEKKTTCGTVCL---KYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTY
:: :::.:..: :::.: .:..:::: : .... .: .:
NP_003 MARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATLSSSFPS
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 LATAYILVVAGTVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQ
:..: .:...:. ::. : .:: ...:: . :: .:.:::..:::: .:: .:: ..
NP_003 LSAANLLIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 LNTELKENLKDTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGG
.. ...:: . . : :. ..:.: . .: .:.::: .: :: . ..
NP_003 IDRYAQQDLKKGL-HLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFEVY-------NA
120 130 140 150 160
180 190 200 210 220 230
pF1KE1 RVVPDSCCKTVVALCGQRDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFG
:::::: :: :: . . .. : .....::.: ..: :. : ::..:
NP_003 TRVPDSCCLEFSESCGL--HAPGTWW-KAPCYETVKVWLQENLLAVGIFGLCTALVQILG
170 180 190 200 210
240 250
pF1KE1 MIFTCCLYRSLKLEHY
. :. .:
NP_003 LTFAMTMYCQVVKADTYCA
220 230
>>XP_005253159 (OMIM: 602644) PREDICTED: tetraspanin-4 i (238 aa)
initn: 419 init1: 305 opt: 416 Z-score: 524.7 bits: 104.6 E(85289): 1.7e-22
Smith-Waterman score: 492; 34.2% identity (64.5% similar) in 234 aa overlap (15-245:5-227)
10 20 30 40 50
pF1KE1 MGEFNEKKTTCGTVCL---KYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTY
:: :::.:..: :::.: .:..:::: : .... .: .:
XP_005 MARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATLSSSFPS
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 LATAYILVVAGTVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQ
:..: .:...:. ::. : .:: ...:: . :: .:.:::..:::: .:: .:: ..
XP_005 LSAANLLIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 LNTELKENLKDTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGG
.. ...:: . . : :. ..:.: . .: .:.::: .: :: . ..
XP_005 IDRYAQQDLKKGL-HLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFEVY-------NA
120 130 140 150 160
180 190 200 210 220 230
pF1KE1 RVVPDSCCKTVVALCGQRDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFG
:::::: :: :: . . .. : .....::.: ..: :. : ::..:
XP_005 TRVPDSCCLEFSESCGL--HAPGTWW-KAPCYETVKVWLQENLLAVGIFGLCTALVQILG
170 180 190 200 210
240 250
pF1KE1 MIFTCCLYRSLKLEHY
. :. .:
XP_005 LTFAMTMYCQVVKADTYCA
220 230
253 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:30:21 2016 done: Sun Nov 6 23:30:22 2016
Total Scan time: 6.260 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]