FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1378, 249 aa
  1>>>pF1KE1378 249 - 249 aa - 249 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5698+/-0.00031; mu= 13.5543+/- 0.019
 mean_var=71.7958+/-14.411, 0's: 0 Z-trim(117.5): 5  B-trim: 290 in 1/54
 Lambda= 0.151365
 statistics sampled from 29579 (29584) to 29579 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.347), width:  16
 Scan time:  6.420

The best scores are:                                      opt bits E(85289)
NP_066552 (OMIM: 252010,600532) NADH dehydrogenase ( 249) 1688 377.2 1.5e-104
XP_016881271 (OMIM: 252010,600532) PREDICTED: NADH ( 220) 1493 334.6 8.7e-92


>>NP_066552 (OMIM: 252010,600532) NADH dehydrogenase [ub  (249 aa)
 initn: 1688 init1: 1688 opt: 1688  Z-score: 1998.1  bits: 377.2 E(85289): 1.5e-104
Smith-Waterman score: 1688; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)

               10        20        30        40        50        60
pF1KE1 MFFSAALRARAAGLTAHWGRHVRNLHKTVMQNGAGGALFVHRDTPENNPDTPFDFTPENY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MFFSAALRARAAGLTAHWGRHVRNLHKTVMQNGAGGALFVHRDTPENNPDTPFDFTPENY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 KRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 MYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGAC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VNAPMVQINDNYYEDLTAKDIEEIIDELKAGKIPKPGPRSGRFSCEPAGGLTSLTEPPKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 VNAPMVQINDNYYEDLTAKDIEEIIDELKAGKIPKPGPRSGRFSCEPAGGLTSLTEPPKG
              190       200       210       220       230       240

                
pF1KE1 PGFGVQAGL
       :::::::::
NP_066 PGFGVQAGL
                

>>XP_016881271 (OMIM: 252010,600532) PREDICTED: NADH deh  (220 aa)
 initn: 1493 init1: 1493 opt: 1493  Z-score: 1768.8  bits: 334.6 E(85289): 8.7e-92
Smith-Waterman score: 1493; 100.0% identity (100.0% similar) in 220 aa overlap (30-249:1-220)

               10        20        30        40        50        60
pF1KE1 MFFSAALRARAAGLTAHWGRHVRNLHKTVMQNGAGGALFVHRDTPENNPDTPFDFTPENY
                                    :::::::::::::::::::::::::::::::
XP_016                              MQNGAGGALFVHRDTPENNPDTPFDFTPENY
                                            10        20        30 

               70        80        90       100       110       120
pF1KE1 KRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYT
              40        50        60        70        80        90 

              130       140       150       160       170       180
pF1KE1 MYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGAC
             100       110       120       130       140       150 

              190       200       210       220       230       240
pF1KE1 VNAPMVQINDNYYEDLTAKDIEEIIDELKAGKIPKPGPRSGRFSCEPAGGLTSLTEPPKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VNAPMVQINDNYYEDLTAKDIEEIIDELKAGKIPKPGPRSGRFSCEPAGGLTSLTEPPKG
             160       170       180       190       200       210 

                
pF1KE1 PGFGVQAGL
       :::::::::
XP_016 PGFGVQAGL
             220




249 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:48:18 2016 done: Mon Nov  7 02:48:19 2016
 Total Scan time:  6.420 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]