FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1372, 578 aa
  1>>>pF1KE1372 578 - 578 aa - 578 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5945+/-0.000883; mu= 8.3905+/- 0.053
 mean_var=134.6715+/-26.826, 0's: 0 Z-trim(110.6): 17  B-trim: 0 in 0/52
 Lambda= 0.110519
 statistics sampled from 11693 (11700) to 11693 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.359), width:  16
 Scan time:  3.980

The best scores are:                                      opt bits E(32554)
CCDS8388.1 IL10RA gene_id:3587|Hs108|chr11         ( 578) 3896 632.8 3.5e-181


>>CCDS8388.1 IL10RA gene_id:3587|Hs108|chr11              (578 aa)
 initn: 3896 init1: 3896 opt: 3896  Z-score: 3366.4  bits: 632.8 E(32554): 3.5e-181
Smith-Waterman score: 3896; 99.8% identity (99.8% similar) in 578 aa overlap (1-578:1-578)

               10        20        30        40        50        60
pF1KE1 MLPCLVVLLAALLSLRLGSDAHGTELPSPPSVWFEAEFFHHILHWTPIPNQSESTCYEVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MLPCLVVLLAALLSLRLGSDAHGTELPSPPSVWFEAEFFHHILHWTPIPNQSESTCYEVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LLRYGIESWNSISNCSQTLSYDLTAVTLDLYHSNGYRARVRAVDGSRHSNWTVTNTRFSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 LLRYGIESWNSISNCSQTLSYDLTAVTLDLYHSNGYRARVRAVDGSRHSNWTVTNTRFSV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 DEVTLTVGSVNLEIHNGFILGKIQLPRPKMAPANDTYESIFSHFREYEIAIRKVPGNFTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DEVTLTVGSVNLEIHNGFILGKIQLPRPKMAPANDTYESIFSHFREYEIAIRKVPGNFTF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 THKKVKHENFSLLTSGEVGEFCVQVKPSVASRSNKGMWSKEECISLTRQYFTVTNVIIFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 THKKVKHENFSLLTSGEVGEFCVQVKPSVASRSNKGMWSKEECISLTRQYFTVTNVIIFF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 AFVLLLSGALAYCLALQLYVRRRKKLPSVLLFKKPSPFIFISQRPSPETQDTIHPLDEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 AFVLLLSGALAYCLALQLYVRRRKKLPSVLLFKKPSPFIFISQRPSPETQDTIHPLDEEA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 FLKVSPELKNLDLHGSTDSGFGSTKPSLQTEEPQFLLPDPHPQADRTLGNGEPPVLGDSC
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
CCDS83 FLKVSPELKNLDLHGSTDSGFGSTKPSLQTEEPQFLLPDPHPQADRTLGNREPPVLGDSC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 SSGSSNSTDSGICLQEPSLSPSTGPTWEQQVGSNSRGQDDSGIDLVQNSEGRAGDTQGGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 SSGSSNSTDSGICLQEPSLSPSTGPTWEQQVGSNSRGQDDSGIDLVQNSEGRAGDTQGGS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 ALGHHSPPEPEVPGEEDPAAVAFQGYLRQTRCAEEKATKTGCLEEESPLTDGLGPKFGRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ALGHHSPPEPEVPGEEDPAAVAFQGYLRQTRCAEEKATKTGCLEEESPLTDGLGPKFGRC
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 LVDEAGLHPPALAKGYLKQDPLEMTLASSGAPTGQWNQPTEEWSLLALSSCSDLGISDWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 LVDEAGLHPPALAKGYLKQDPLEMTLASSGAPTGQWNQPTEEWSLLALSSCSDLGISDWS
              490       500       510       520       530       540

              550       560       570        
pF1KE1 FAHDLAPLGCVAAPGGLLGSFNSDLVTLPLISSLQSSE
       ::::::::::::::::::::::::::::::::::::::
CCDS83 FAHDLAPLGCVAAPGGLLGSFNSDLVTLPLISSLQSSE
              550       560       570        




578 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:21:18 2016 done: Mon Nov  7 00:21:19 2016
 Total Scan time:  3.980 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]